ZRdb KZFP & Repeats
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LTR_MLT1G1

  • Name
    MLT1G1
  • Repbase
    MLT1G1
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001012
Description :

MLT1G1 has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalianapparent LTR retrotransposon) element is derived from an ERV (EndogenousRetrovirus), but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggcagattgtattttccaaagatggccgcaacaatatctcccatcccacatgctcttcttacaatgtgacnttgacactcctcccatcgagaggtggggtctatgttccctccccttgaatctgggcgggcctttgtgactgcctcgaccaatagaatgcggcggaagtgacgctgtgtgacttccgaggctaggtcataaaagtgccatgcagcttccgccttgctctcttgggacgctcgctcttggaacccagccgccatgctgtgaggaagcccaagcagcccatggagaggcccacgtggagaggaactgaggcttccggccgacagccccagctgagntcccagccgacagccagcatcaacttgccagncatgtgagtgagccatcttgnaggtgattccagcccccagcctttgagccgccccagctgacgccgcgtggagcagagacgagccgtccccgccgagccctgcccaaattgcagattcgtgagcaaaataaatgattgttgttgttttaagccactaagttttggggtggtttgttacgcagcaatagataaccggaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF584 31 99.0 Highly correlated
2 ZNF707 12 74.0 Weakly correlated
3 ZNF382 9 99.0 Highly correlated
4 ZIM3 5 87.0 Moderately correlated
5 ZNF766 5 43.0 Weakly correlated
6 ZNF331 5 94.0 Moderately correlated
7 ZNF680 4 28.9 Weakly correlated
8 ZNF679 4 28.9 Weakly correlated
9 ZNF846 2 74.0 Weakly correlated
10 ZNF682 2 28.9 Weakly correlated
11 ZNF589 2 28.9 Weakly correlated
12 ZNF486 2 8.6 Weakly correlated
13 ZNF479 2 6.4 Weakly correlated
14 ZNF28 2 28.9 Weakly correlated
15 ZNF565 1 99.0 Highly correlated
16 ZFP28 1 99.0 Highly correlated
17 ZKSCAN1 1 160.0 Weakly correlated
18 ZNF723 1 15.2 Weakly correlated
19 ZKSCAN8 1 160.0 Weakly correlated
20 ZNF133 1 99.0 Highly correlated
21 ZNF175 1 94.0 Moderately correlated
22 ZNF18 1 160.0 Weakly correlated
23 ZNF674 1 99.0 Highly correlated
24 ZNF197 1 99.0 Highly correlated
25 ZNF585B 1 99.0 Highly correlated
26 ZNF257 1 0.0 Weakly correlated
27 ZNF560 1 43.0 Weakly correlated
28 ZNF554 1 99.0 Highly correlated
29 ZNF548 1 94.0 Moderately correlated
30 ZNF534 1 19.6 Weakly correlated
31 ZNF274 1 99.0 Highly correlated
32 ZNF287 1 99.0 Highly correlated
33 ZNF471 1 94.0 Moderately correlated
34 ZNF468 1 28.9 Weakly correlated
35 ZNF441 1 43.0 Weakly correlated
36 ZNF425 1 94.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 4 87.0 Moderately correlated
2 ZNF707 3 74.0 Weakly correlated
3 ZNF133 1 99.0 Highly correlated
4 ZNF382 1 99.0 Highly correlated
5 ZNF534 1 19.6 Weakly correlated
6 ZNF257 1 0.0 Weakly correlated
7 ZNF287 1 99.0 Highly correlated
8 ZNF846 1 74.0 Weakly correlated
9 ZNF479 1 6.4 Weakly correlated
10 ZNF680 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats