ZRdb KZFP & Repeats
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LTR_MLT1G

  • Name
    MLT1G
  • Repbase
    MLT1G2
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001130
Description :

A full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) elementis derived from an ERV (Endogenous Retrovirus), but only contains theGag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggcggtttttaaaacatggccgcaaattctttgacactcctcccatcgagaggtggggtctatgtcccctccccttgaatctgggcgggcttgtgactgcttcgaccaatagagtacggcggaagtgacgctgtgtgacttccgaggctaggtcataaaaggccatgcagcttccgccttgttcgctggaacactcgctcttggagccctgagccgccatgtaagaagtccgactaccctgaggccgccatgctgtgaggaagcccaagccacatggagaggccacgtgtaggcgctccggtcgacagtcccagctgagcccagccttcgagtcatcccagcccaggcgccagacatgtgagtgaagaagcctccagatgattccagcccccagccgttcgagtcacccccagccgttcgagtcttcccagctgaggccccagacatcgtggagcagagacaagccatccccgctgtgccctgtccgaattcctgacccacagaatccgtgagcataataaaatggttgttgttttangccactaagttttggggtggtttgttacgcagcaatagataactggaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF584 21 99.0 Highly correlated
2 ZNF382 6 99.0 Highly correlated
3 ZFP37 5 99.0 Highly correlated
4 ZIM3 5 87.0 Moderately correlated
5 ZNF707 4 74.0 Weakly correlated
6 ZNF479 4 6.4 Weakly correlated
7 ZNF394 4 99.0 Highly correlated
8 ZKSCAN8 3 160.0 Weakly correlated
9 ZNF558 3 99.0 Highly correlated
10 ZNF723 3 15.2 Weakly correlated
11 ZNF263 3 180.0 Weakly correlated
12 ZNF2 2 99.0 Highly correlated
13 ZNF324 2 99.0 Highly correlated
14 ZNF793 2 99.0 Highly correlated
15 ZNF175 2 94.0 Moderately correlated
16 ZNF101 2 43.0 Weakly correlated
17 ZNF679 2 28.9 Weakly correlated
18 ZNF534 2 19.6 Weakly correlated
19 ZKSCAN1 2 160.0 Weakly correlated
20 ZNF766 1 43.0 Weakly correlated
21 ZNF792 1 94.0 Moderately correlated
22 ZNF846 1 74.0 Weakly correlated
23 ZNF701 1 28.9 Weakly correlated
24 ZNF589 1 28.9 Weakly correlated
25 ZNF93 1 8.6 Weakly correlated
26 ZNF554 1 99.0 Highly correlated
27 ZNF519 1 19.6 Weakly correlated
28 ZNF490 1 43.0 Weakly correlated
29 ZNF485 1 94.0 Moderately correlated
30 ZNF471 1 94.0 Moderately correlated
31 ZNF343 1 74.0 Weakly correlated
32 ZNF257 1 0.0 Weakly correlated
33 ZNF251 1 94.0 Moderately correlated
34 ZNF160 1 74.0 Weakly correlated
35 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 4 6.4 Weakly correlated
2 ZIM3 3 87.0 Moderately correlated
3 ZNF723 3 15.2 Weakly correlated
4 ZNF707 2 74.0 Weakly correlated
5 ZNF584 2 99.0 Highly correlated
6 ZNF471 1 94.0 Moderately correlated
7 ZNF485 1 94.0 Moderately correlated
8 ZNF534 1 19.6 Weakly correlated
9 ZNF257 1 0.0 Weakly correlated
10 ZNF263 1 180.0 Weakly correlated
11 ZNF679 1 28.9 Weakly correlated
12 ZNF793 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats