ZRdb KZFP & Repeats
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LTR_MLT1F2

  • Name
    MLT1F2
  • Repbase
    MLT1F2
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001010
Description :

MLT1F2 has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalianapparent LTR retrotransposon) element is derived from an ERV (EndogenousRetrovirus), but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggtaggcagcctctaagatggcccccaatgatccccgcctcctggtattcacgcccttgtgtaatcccctccccttgagtgtgggctggacctagtgactcgcttctaacgaatagaatacggcaaaagtgatgggatgtcacttccgagattaggttacaaaaagactgtggcttccgtcttgcgcgccctctcttgctctctcgcttgctcgctctganggaagcnagctgccatgttgtgagctgccctatggagaggcccacgtggcaaggaactgagggcggcctccggccaacagccagcgaggaactgagncctgccaacaaccacgtgagtgagcttggaagcggatcctcccccagtcgagccttnagatgaccgcagccccggccgacaccttgattgcagcctcgtgagagaccctgagccagaggcacccagctaagccgcgcccggattcctgacccacagaaactgtgagataataaatgtntgttgttttaagccgctaagttttggggtaatttgttacgcagcaatagataactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF304 416 99.0 Highly correlated
2 ZNF382 317 99.0 Highly correlated
3 ZNF766 127 43.0 Weakly correlated
4 ZNF350 126 99.0 Highly correlated
5 ZIM3 108 87.0 Moderately correlated
6 ZNF263 96 180.0 Weakly correlated
7 ZNF175 71 94.0 Moderately correlated
8 ZNF534 65 19.6 Weakly correlated
9 ZKSCAN1 60 160.0 Weakly correlated
10 ZNF394 59 99.0 Highly correlated
11 ZNF589 58 28.9 Weakly correlated
12 ZNF679 56 28.9 Weakly correlated
13 ZNF680 47 28.9 Weakly correlated
14 ZNF18 46 160.0 Weakly correlated
15 ZNF317 41 99.0 Highly correlated
16 ZNF554 40 99.0 Highly correlated
17 ZNF479 38 6.4 Weakly correlated
18 ZNF584 36 99.0 Highly correlated
19 ZNF705B 33 28.9 Weakly correlated
20 ZNF30 32 94.0 Moderately correlated
21 ZNF197 31 99.0 Highly correlated
22 ZNF490 29 43.0 Weakly correlated
23 ZFP37 28 99.0 Highly correlated
24 ZNF528 28 43.0 Weakly correlated
25 ZNF2 27 99.0 Highly correlated
26 ZFP69B 26 99.0 Highly correlated
27 ZFP57 22 87.0 Moderately correlated
28 ZNF558 22 99.0 Highly correlated
29 ZNF705D 22 28.9 Weakly correlated
30 ZKSCAN8 21 160.0 Weakly correlated
31 ZNF324 21 99.0 Highly correlated
32 ZNF597 20 94.0 Moderately correlated
33 ZNF723 20 15.2 Weakly correlated
34 ZNF793 20 99.0 Highly correlated
35 ZNF274 19 99.0 Highly correlated
36 ZNF707 17 74.0 Weakly correlated
37 ZNF101 16 43.0 Weakly correlated
38 ZNF257 15 0.0 Weakly correlated
39 ZNF701 14 28.9 Weakly correlated
40 ZNF251 12 94.0 Moderately correlated
41 ZNF585B 12 99.0 Highly correlated
42 ZNF610 12 28.9 Weakly correlated
43 ZNF75D 12 94.0 Moderately correlated
44 ZNF320 11 28.9 Weakly correlated
45 ZNF506 11 28.9 Weakly correlated
46 ZNF28 10 28.9 Weakly correlated
47 ZNF543 10 99.0 Highly correlated
48 ZNF133 9 99.0 Highly correlated
49 ZNF331 9 94.0 Moderately correlated
50 ZNF140 8 99.0 Highly correlated
51 ZNF425 8 94.0 Moderately correlated
52 ZNF441 8 43.0 Weakly correlated
53 ZNF92 8 28.9 Weakly correlated
54 ZNF273 7 28.9 Weakly correlated
55 ZNF519 7 19.6 Weakly correlated
56 ZNF547 7 74.0 Weakly correlated
57 ZNF485 6 94.0 Moderately correlated
58 ZNF565 6 99.0 Highly correlated
59 ZNF735 6 28.9 Weakly correlated
60 ZNF792 6 94.0 Moderately correlated
61 ZNF222 5 43.0 Weakly correlated
62 ZNF486 5 8.6 Weakly correlated
63 ZNF677 5 99.0 Highly correlated
64 ZNF823 5 43.0 Weakly correlated
65 ZNF468 4 28.9 Weakly correlated
66 ZNF549 4 87.0 Moderately correlated
67 ZNF585A 4 99.0 Highly correlated
68 ZNF682 4 28.9 Weakly correlated
69 ZKSCAN5 3 160.0 Weakly correlated
70 ZNF169 3 94.0 Moderately correlated
71 ZNF189 3 99.0 Highly correlated
72 ZNF202 3 160.0 Weakly correlated
73 ZNF264 3 99.0 Highly correlated
74 ZNF284 3 43.0 Weakly correlated
75 ZNF334 3 99.0 Highly correlated
76 ZNF41 3 99.0 Highly correlated
77 ZNF429 3 28.9 Weakly correlated
78 ZNF471 3 94.0 Moderately correlated
79 ZNF483 3 99.0 Highly correlated
80 ZNF563 3 28.9 Weakly correlated
81 ZNF586 3 43.0 Weakly correlated
82 ZNF778 3 74.0 Weakly correlated
83 ZNF8 3 99.0 Highly correlated
84 RBAK 2 99.0 Highly correlated
85 ZFP28 2 99.0 Highly correlated
86 ZIK1 2 87.0 Moderately correlated
87 ZNF136 2 74.0 Weakly correlated
88 ZNF141 2 43.0 Weakly correlated
89 ZNF17 2 69.0 Weakly correlated
90 ZNF182 2 99.0 Highly correlated
91 ZNF26 2 99.0 Highly correlated
92 ZNF282 2 319.0 Weakly correlated
93 ZNF337 2 43.0 Weakly correlated
94 ZNF33A 2 99.0 Highly correlated
95 ZNF347 2 43.0 Weakly correlated
96 ZNF454 2 99.0 Highly correlated
97 ZNF484 2 99.0 Highly correlated
98 ZNF560 2 43.0 Weakly correlated
99 ZNF671 2 94.0 Moderately correlated
100 ZNF716 2 19.6 Weakly correlated
101 ZNF730 2 19.6 Weakly correlated
102 ZNF736 2 43.0 Weakly correlated
103 ZNF75A 2 94.0 Moderately correlated
104 ZNF84 2 99.0 Highly correlated
105 ZNF91 2 6.0 Weakly correlated
106 ZFP30 1 99.0 Highly correlated
107 ZFP69 1 99.0 Highly correlated
108 ZNF10 1 99.0 Highly correlated
109 ZNF160 1 74.0 Weakly correlated
110 ZNF224 1 69.0 Weakly correlated
111 ZNF248 1 99.0 Highly correlated
112 ZNF343 1 74.0 Weakly correlated
113 ZNF354A 1 99.0 Highly correlated
114 ZNF354C 1 99.0 Highly correlated
115 ZNF417 1 28.9 Weakly correlated
116 ZNF430 1 19.6 Weakly correlated
117 ZNF440 1 28.9 Weakly correlated
118 ZNF445 1 99.0 Highly correlated
119 ZNF44 1 43.0 Weakly correlated
120 ZNF510 1 99.0 Highly correlated
121 ZNF573 1 94.0 Moderately correlated
122 ZNF587 1 28.9 Weakly correlated
123 ZNF596 1 94.0 Moderately correlated
124 ZNF605 1 99.0 Highly correlated
125 ZNF607 1 43.0 Weakly correlated
126 ZNF616 1 43.0 Weakly correlated
127 ZNF627 1 74.0 Weakly correlated
128 ZNF641 1 99.0 Highly correlated
129 ZNF669 1 43.0 Weakly correlated
130 ZNF674 1 99.0 Highly correlated
131 ZNF765 1 8.6 Weakly correlated
132 ZNF77 1 87.0 Moderately correlated
133 ZNF780A 1 43.0 Weakly correlated
134 ZNF808 1 19.6 Weakly correlated
135 ZNF816 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF304 374 99.0 Highly correlated
2 ZNF350 81 99.0 Highly correlated
3 ZIM3 46 87.0 Moderately correlated
4 ZNF534 40 19.6 Weakly correlated
5 ZNF263 39 180.0 Weakly correlated
6 ZNF30 15 94.0 Moderately correlated
7 ZNF528 14 43.0 Weakly correlated
8 ZNF479 13 6.4 Weakly correlated
9 ZNF680 12 28.9 Weakly correlated
10 ZNF490 11 43.0 Weakly correlated
11 ZNF317 10 99.0 Highly correlated
12 ZNF705B 10 28.9 Weakly correlated
13 ZFP57 9 87.0 Moderately correlated
14 ZNF723 9 15.2 Weakly correlated
15 ZNF705D 8 28.9 Weakly correlated
16 ZNF75D 7 94.0 Moderately correlated
17 ZNF18 7 160.0 Weakly correlated
18 ZNF506 7 28.9 Weakly correlated
19 ZNF257 7 0.0 Weakly correlated
20 ZNF766 7 43.0 Weakly correlated
21 ZFP37 7 99.0 Highly correlated
22 ZNF565 6 99.0 Highly correlated
23 ZNF679 6 28.9 Weakly correlated
24 ZNF707 6 74.0 Weakly correlated
25 ZNF701 5 28.9 Weakly correlated
26 ZNF793 5 99.0 Highly correlated
27 ZNF554 5 99.0 Highly correlated
28 ZNF331 5 94.0 Moderately correlated
29 ZNF597 5 94.0 Moderately correlated
30 ZKSCAN1 5 160.0 Weakly correlated
31 ZNF175 4 94.0 Moderately correlated
32 ZNF320 4 28.9 Weakly correlated
33 ZNF382 4 99.0 Highly correlated
34 ZNF101 4 43.0 Weakly correlated
35 ZNF589 4 28.9 Weakly correlated
36 ZNF197 3 99.0 Highly correlated
37 ZNF140 3 99.0 Highly correlated
38 ZNF133 3 99.0 Highly correlated
39 ZNF519 3 19.6 Weakly correlated
40 ZNF677 3 99.0 Highly correlated
41 ZNF584 2 99.0 Highly correlated
42 ZNF468 2 28.9 Weakly correlated
43 ZNF347 2 43.0 Weakly correlated
44 ZNF483 2 99.0 Highly correlated
45 ZNF251 2 94.0 Moderately correlated
46 ZFP69B 2 99.0 Highly correlated
47 ZIK1 2 87.0 Moderately correlated
48 ZKSCAN5 2 160.0 Weakly correlated
49 ZNF485 2 94.0 Moderately correlated
50 ZNF671 2 94.0 Moderately correlated
51 ZNF141 2 43.0 Weakly correlated
52 ZNF169 1 94.0 Moderately correlated
53 ZNF264 1 99.0 Highly correlated
54 ZNF28 1 28.9 Weakly correlated
55 ZNF282 1 319.0 Weakly correlated
56 ZNF273 1 28.9 Weakly correlated
57 ZNF610 1 28.9 Weakly correlated
58 ZNF780A 1 43.0 Weakly correlated
59 ZNF2 1 99.0 Highly correlated
60 ZNF440 1 28.9 Weakly correlated
61 ZFP69 1 99.0 Highly correlated
62 ZNF585B 1 99.0 Highly correlated
63 ZNF735 1 28.9 Weakly correlated
64 ZNF92 1 28.9 Weakly correlated
65 ZNF189 1 99.0 Highly correlated
66 ZNF792 1 94.0 Moderately correlated
67 ZNF430 1 19.6 Weakly correlated
68 ZNF44 1 43.0 Weakly correlated
69 ZNF510 1 99.0 Highly correlated
70 ZNF324 1 99.0 Highly correlated
71 ZNF543 1 99.0 Highly correlated
72 ZNF549 1 87.0 Moderately correlated
73 ZNF26 1 99.0 Highly correlated
74 ZNF222 1 43.0 Weakly correlated
75 ZNF716 1 19.6 Weakly correlated
76 ZNF730 1 19.6 Weakly correlated
77 ZNF596 1 94.0 Moderately correlated
78 ZNF778 1 74.0 Weakly correlated
79 ZNF75A 1 94.0 Moderately correlated
80 ZNF585A 1 99.0 Highly correlated
81 ZNF607 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Highly correlated
2 ZFP57 87.0 Moderately correlated
3 ZNF257 0.0 Weakly correlated
4 ZNF707 74.0 Weakly correlated