ZRdb KZFP & Repeats
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LTR_MLT1F1

  • Name
    MLT1F1
  • Repbase
    MLT1F1
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001009
Description :

MLT1F1 has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalianapparent LTR retrotransposon) element is derived from an ERV (EndogenousRetrovirus), but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggtggttttaaaatatgtccacaaattctttgatactcctcccttcaagaggtggagcctaattcccctccccttgagtgtgggctggacttagtgactcgcttctaacgaatagaatatggcggaagtgacggtgtgtgacttccgagactaggtcataaaaggcattgcggcttcctccttgctctctctcttggatcactcgctctgggggaagccagctgccatgtcgtgaggacactcaagcagccctatggagaggcccacgtggcgaggaactgaggcctcctgccaacagccagcaaggaactgaggcctcctgccaacagccatgtgagtgagccatcttggaagcggatcctccagccccagtcaagccttcagatgactgcagccccggccgacatcttgactgcaacctcatgagagaccctgagccagaaccacccagctaagccgctcccgaattcctgacccacagaaactgtgtgagataataaatgtttgttgttttaagccgctaagttttggggtaatttgttacgcagcaatagataactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF584 32 99.0 Highly correlated
2 ZNF382 20 99.0 Highly correlated
3 ZNF394 7 99.0 Highly correlated
4 ZNF479 5 6.4 Weakly correlated
5 ZNF846 4 74.0 Weakly correlated
6 ZIM3 3 87.0 Moderately correlated
7 ZNF766 3 43.0 Weakly correlated
8 ZFP37 3 99.0 Highly correlated
9 ZNF528 2 43.0 Weakly correlated
10 ZNF680 2 28.9 Weakly correlated
11 ZNF18 2 160.0 Weakly correlated
12 ZNF263 2 180.0 Weakly correlated
13 ZNF549 1 87.0 Moderately correlated
14 ZNF468 1 28.9 Weakly correlated
15 ZNF554 1 99.0 Highly correlated
16 ZNF563 1 28.9 Weakly correlated
17 ZNF567 1 99.0 Highly correlated
18 ZNF674 1 99.0 Highly correlated
19 ZNF684 1 99.0 Highly correlated
20 ZNF730 1 19.6 Weakly correlated
21 ZNF778 1 74.0 Weakly correlated
22 ZNF534 1 19.6 Weakly correlated
23 ZNF506 1 28.9 Weakly correlated
24 ZNF418 1 43.0 Weakly correlated
25 ZNF324 1 99.0 Highly correlated
26 ZNF28 1 28.9 Weakly correlated
27 ZNF273 1 28.9 Weakly correlated
28 ZNF182 1 99.0 Highly correlated
29 ZNF175 1 94.0 Moderately correlated
30 ZNF133 1 99.0 Highly correlated
31 ZNF101 1 43.0 Weakly correlated
32 ZNF100 1 28.9 Weakly correlated
33 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 5 6.4 Weakly correlated
2 ZNF846 4 74.0 Weakly correlated
3 ZIM3 2 87.0 Moderately correlated
4 ZNF584 2 99.0 Highly correlated
5 ZNF680 2 28.9 Weakly correlated
6 ZNF175 1 94.0 Moderately correlated
7 ZNF528 1 43.0 Weakly correlated
8 ZNF549 1 87.0 Moderately correlated
9 ZNF684 1 99.0 Highly correlated
10 ZNF468 1 28.9 Weakly correlated
11 ZNF534 1 19.6 Weakly correlated
12 ZNF382 1 99.0 Highly correlated
13 ZNF133 1 99.0 Highly correlated
14 ZNF263 1 180.0 Weakly correlated
15 ZNF567 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats