ZRdb KZFP & Repeats
...

LTR_MLT1F

  • Name
    MLT1F
  • Repbase
    MLT1F
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001008
Description :

MLT1F (Mammalian LTR Transposon) has 5 bp TSDs. Note that a full-lengthERV-MaLR (Mammalian apparent LTR retrotransposon) element is derivedfrom an ERV (Endogenous Retrovirus), but only contains the Gag gene(that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggtagccagcctccaagatggcccccaatgatccccgcctcctggtattcacgcccttgtgtagtcccctcccacactgaatagggctggcctgtgtgaccaataggatatngcggaagtgacggtgtgtgacttccgaggctaggtcataaaagacattgcggcttccgccttgctctctcttggatcactcgctctgggggaagccagctgccatgtcgtgaggacactcaagcagccctgtggagaggcccacgtggcgaggaactgaggcctcctgccaacagccagcaccaacttgccagccatgtgagtgagccatcttggaagcggatcctccagccccagtcaagccttcagatgactgcagccccggccgacatcttgactgcaacctcatgagagaccctgagccagaaccacccagctaagccgctcccgaattcctgacccacagaaactgtgtgagataataaatgtttattgttgttttaagccgctaagttttggggtaatttgttacgcagcaatagataactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 296 99.0 Highly correlated
2 ZNF304 256 99.0 Highly correlated
3 ZNF766 139 43.0 Weakly correlated
4 ZNF350 138 99.0 Highly correlated
5 ZNF565 101 99.0 Highly correlated
6 ZNF263 81 180.0 Weakly correlated
7 ZNF18 75 160.0 Weakly correlated
8 ZNF589 75 28.9 Weakly correlated
9 ZNF175 71 94.0 Moderately correlated
10 ZNF394 66 99.0 Highly correlated
11 ZNF584 66 99.0 Highly correlated
12 ZNF331 62 94.0 Moderately correlated
13 ZKSCAN1 48 160.0 Weakly correlated
14 ZNF317 45 99.0 Highly correlated
15 ZFP37 42 99.0 Highly correlated
16 ZNF554 41 99.0 Highly correlated
17 ZIM3 39 87.0 Moderately correlated
18 ZNF197 39 99.0 Highly correlated
19 ZNF679 38 28.9 Weakly correlated
20 ZNF2 37 99.0 Highly correlated
21 ZNF479 37 6.4 Weakly correlated
22 ZKSCAN8 36 160.0 Weakly correlated
23 ZNF534 36 19.6 Weakly correlated
24 ZNF257 31 0.0 Weakly correlated
25 ZFP69B 27 99.0 Highly correlated
26 ZNF705B 27 28.9 Weakly correlated
27 ZNF324 26 99.0 Highly correlated
28 ZNF680 26 28.9 Weakly correlated
29 ZNF597 25 94.0 Moderately correlated
30 ZNF558 23 99.0 Highly correlated
31 ZNF101 20 43.0 Weakly correlated
32 ZNF528 20 43.0 Weakly correlated
33 ZNF705D 18 28.9 Weakly correlated
34 ZNF723 18 15.2 Weakly correlated
35 ZNF707 16 74.0 Weakly correlated
36 ZNF793 16 99.0 Highly correlated
37 ZNF274 14 99.0 Highly correlated
38 ZNF251 13 94.0 Moderately correlated
39 ZNF610 13 28.9 Weakly correlated
40 ZNF701 12 28.9 Weakly correlated
41 ZNF486 11 8.6 Weakly correlated
42 ZNF735 11 28.9 Weakly correlated
43 ZFP57 10 87.0 Moderately correlated
44 ZNF30 9 94.0 Moderately correlated
45 ZNF320 9 28.9 Weakly correlated
46 ZNF585B 9 99.0 Highly correlated
47 ZNF140 8 99.0 Highly correlated
48 ZNF264 8 99.0 Highly correlated
49 ZNF549 8 87.0 Moderately correlated
50 ZNF75D 7 94.0 Moderately correlated
51 ZNF133 6 99.0 Highly correlated
52 ZNF506 6 28.9 Weakly correlated
53 ZNF682 6 28.9 Weakly correlated
54 ZNF425 5 94.0 Moderately correlated
55 ZNF441 5 43.0 Weakly correlated
56 ZNF519 5 19.6 Weakly correlated
57 ZNF778 5 74.0 Weakly correlated
58 ZNF786 5 99.0 Highly correlated
59 ZNF92 5 28.9 Weakly correlated
60 ZNF93 5 8.6 Weakly correlated
61 ZKSCAN5 4 160.0 Weakly correlated
62 ZNF222 4 43.0 Weakly correlated
63 ZNF282 4 319.0 Weakly correlated
64 ZNF284 4 43.0 Weakly correlated
65 ZNF28 4 28.9 Weakly correlated
66 ZNF429 4 28.9 Weakly correlated
67 ZNF44 4 43.0 Weakly correlated
68 ZNF471 4 94.0 Moderately correlated
69 ZNF490 4 43.0 Weakly correlated
70 ZNF547 4 74.0 Weakly correlated
71 ZNF823 4 43.0 Weakly correlated
72 ZNF136 3 74.0 Weakly correlated
73 ZNF17 3 69.0 Weakly correlated
74 ZNF202 3 160.0 Weakly correlated
75 ZNF273 3 28.9 Weakly correlated
76 ZNF347 3 43.0 Weakly correlated
77 ZNF468 3 28.9 Weakly correlated
78 ZNF567 3 99.0 Highly correlated
79 ZNF585A 3 99.0 Highly correlated
80 ZNF641 3 99.0 Highly correlated
81 ZNF792 3 94.0 Moderately correlated
82 ZNF816 3 28.9 Weakly correlated
83 ZFP69 2 99.0 Highly correlated
84 ZNF141 2 43.0 Weakly correlated
85 ZNF189 2 99.0 Highly correlated
86 ZNF230 2 28.9 Weakly correlated
87 ZNF354A 2 99.0 Highly correlated
88 ZNF418 2 43.0 Weakly correlated
89 ZNF41 2 99.0 Highly correlated
90 ZNF440 2 28.9 Weakly correlated
91 ZNF563 2 28.9 Weakly correlated
92 ZNF671 2 94.0 Moderately correlated
93 ZNF695 2 28.9 Weakly correlated
94 ZNF730 2 19.6 Weakly correlated
95 ZNF799 2 43.0 Weakly correlated
96 ZNF808 2 19.6 Weakly correlated
97 ZNF8 2 99.0 Highly correlated
98 ZNF91 2 6.0 Weakly correlated
99 ZFP14 1 99.0 Highly correlated
100 ZKSCAN3 1 99.0 Highly correlated
101 ZNF100 1 28.9 Weakly correlated
102 ZNF135 1 94.0 Moderately correlated
103 ZNF157 1 99.0 Highly correlated
104 ZNF169 1 94.0 Moderately correlated
105 ZNF182 1 99.0 Highly correlated
106 ZNF214 1 99.0 Highly correlated
107 ZNF225 1 74.0 Weakly correlated
108 ZNF26 1 99.0 Highly correlated
109 ZNF333 1 99.0 Highly correlated
110 ZNF337 1 43.0 Weakly correlated
111 ZNF420 1 94.0 Moderately correlated
112 ZNF430 1 19.6 Weakly correlated
113 ZNF431 1 28.9 Weakly correlated
114 ZNF433 1 43.0 Weakly correlated
115 ZNF436 1 180.0 Weakly correlated
116 ZNF510 1 99.0 Highly correlated
117 ZNF527 1 99.0 Highly correlated
118 ZNF543 1 99.0 Highly correlated
119 ZNF568 1 99.0 Highly correlated
120 ZNF586 1 43.0 Weakly correlated
121 ZNF605 1 99.0 Highly correlated
122 ZNF611 1 19.6 Weakly correlated
123 ZNF615 1 99.0 Highly correlated
124 ZNF674 1 99.0 Highly correlated
125 ZNF675 1 8.6 Weakly correlated
126 ZNF677 1 99.0 Highly correlated
127 ZNF765 1 8.6 Weakly correlated
128 ZNF780A 1 43.0 Weakly correlated
129 ZNF7 1 99.0 Highly correlated
130 ZNF81 1 99.0 Highly correlated
131 ZNF891 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF304 251 99.0 Highly correlated
2 ZNF565 96 99.0 Highly correlated
3 ZNF350 96 99.0 Highly correlated
4 ZNF331 25 94.0 Moderately correlated
5 ZNF257 19 0.0 Weakly correlated
6 ZIM3 16 87.0 Moderately correlated
7 ZNF382 16 99.0 Highly correlated
8 ZNF534 15 19.6 Weakly correlated
9 ZNF554 14 99.0 Highly correlated
10 ZNF18 14 160.0 Weakly correlated
11 ZNF479 11 6.4 Weakly correlated
12 ZNF263 11 180.0 Weakly correlated
13 ZNF175 8 94.0 Moderately correlated
14 ZNF317 8 99.0 Highly correlated
15 ZFP37 8 99.0 Highly correlated
16 ZNF723 7 15.2 Weakly correlated
17 ZNF793 7 99.0 Highly correlated
18 ZNF766 7 43.0 Weakly correlated
19 ZNF735 6 28.9 Weakly correlated
20 ZNF589 6 28.9 Weakly correlated
21 ZNF584 5 99.0 Highly correlated
22 ZNF528 5 43.0 Weakly correlated
23 ZNF597 5 94.0 Moderately correlated
24 ZFP57 5 87.0 Moderately correlated
25 ZNF101 5 43.0 Weakly correlated
26 ZNF44 4 43.0 Weakly correlated
27 ZNF680 4 28.9 Weakly correlated
28 ZNF324 4 99.0 Highly correlated
29 ZNF705B 3 28.9 Weakly correlated
30 ZNF558 3 99.0 Highly correlated
31 ZNF468 3 28.9 Weakly correlated
32 ZNF679 3 28.9 Weakly correlated
33 ZNF506 3 28.9 Weakly correlated
34 ZNF75D 3 94.0 Moderately correlated
35 ZNF705D 3 28.9 Weakly correlated
36 ZNF133 3 99.0 Highly correlated
37 ZNF486 3 8.6 Weakly correlated
38 ZNF778 2 74.0 Weakly correlated
39 ZFP69B 2 99.0 Highly correlated
40 ZNF707 2 74.0 Weakly correlated
41 ZNF610 2 28.9 Weakly correlated
42 ZKSCAN5 2 160.0 Weakly correlated
43 ZNF471 2 94.0 Moderately correlated
44 ZNF140 2 99.0 Highly correlated
45 ZNF2 2 99.0 Highly correlated
46 ZNF251 2 94.0 Moderately correlated
47 ZKSCAN1 2 160.0 Weakly correlated
48 ZFP69 2 99.0 Highly correlated
49 ZNF585A 2 99.0 Highly correlated
50 ZNF141 2 43.0 Weakly correlated
51 ZNF30 2 94.0 Moderately correlated
52 ZNF567 2 99.0 Highly correlated
53 ZNF197 2 99.0 Highly correlated
54 ZNF264 2 99.0 Highly correlated
55 ZNF549 2 87.0 Moderately correlated
56 ZNF519 2 19.6 Weakly correlated
57 ZNF641 1 99.0 Highly correlated
58 ZNF222 1 43.0 Weakly correlated
59 ZNF585B 1 99.0 Highly correlated
60 ZNF282 1 319.0 Weakly correlated
61 ZNF347 1 43.0 Weakly correlated
62 ZNF333 1 99.0 Highly correlated
63 ZNF490 1 43.0 Weakly correlated
64 ZNF7 1 99.0 Highly correlated
65 ZNF17 1 69.0 Weakly correlated
66 ZKSCAN8 1 160.0 Weakly correlated
67 ZNF189 1 99.0 Highly correlated
68 ZNF136 1 74.0 Weakly correlated
69 ZNF273 1 28.9 Weakly correlated
70 ZNF695 1 28.9 Weakly correlated
71 ZNF202 1 160.0 Weakly correlated
72 ZNF429 1 28.9 Weakly correlated
73 ZNF433 1 43.0 Weakly correlated
74 ZNF440 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Highly correlated
2 ZNF18 160.0 Weakly correlated
3 ZNF257 0.0 Weakly correlated
4 ZNF331 94.0 Moderately correlated
5 ZNF554 99.0 Highly correlated
6 ZNF565 99.0 Highly correlated