ZRdb KZFP & Repeats
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LTR_MLT1F-INT

  • Name
    MLT1F-INT
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001011
Description :

Note that a full-length ERV-MaLR (Mammalian apparent LTRretrotransposon) element is derived from an ERV (Endogenous Retrovirus),but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gattttggtacctggaagtggggtgctgccgtaacaaatacctaaaaatgtgggagtggctttggaaccgggcagtgggcggaagctggaaggattttgaggagcgtgntagngaaagcctaaantgccttgaacagactgttagtagaaatctggactttgaggangctgccggtgagggctcaaagggaagtgaggaanatgttattggaaactggaggaaaggggatccttgttatgtagtggcagaaagcttagcaanactgtcgcctgcagttatgtggaaagtagaaaatgtanctaatgaactnggtgatctagctaaggagatttccaagcaaagtgttgaaggtgccgcctggtttcttcttgctgcttatagtaaaatgcgagaggagagagataaactgagggaagaactgttaaacaaaaaggagccaggacttgatggttttgaaaattctcagcctctccagatggcaaangatgctaaaattaagaaatggcttccgagcaaagatcaaatccagggcactgtcaggaaaacatggtctaaagatgaagccgagggtgtgactgtaaaatcctttgttaagacctcagaaagatcaaaggtggtgcctcagagtactattcagtcanacaaaaggccctttaaagagattaagggtgtgcctcacagatcctctcaatcaaacaatagggcttctaagaagcttaagggcgttgtccctcagccgtctcagcagaagcccaaggtagagaagggcttatctcgaagagatttgtgggtgtggcttttgtctaatggagtgaaccccagtaagattcacaggagacccacaaagtttttaagagaattatatcagcagaaacactgccagcttggactgaaagggacagagacagtacaaaatgaaaagaggcctttggacccccaaanttctacnggcaggaagcaggctganaaaactactcagctgcaaacacgtgctacctttcatgaaaaaggaaggatgactcagagggcggaaccaagagcccagagggcggagccaagagccacggagaattattcccaggccttgagacctaatcaaggaacttccaacatttgcccggctggatttcagaattgctatggaccagtgactcctttgtgcctcccattttccccctttttgaacgggaatgtctatagcggttatcctatgcctgtcccaccattgtatgttgggtgtgtngggggcagataacttgtctctttagtttcacaggtctncagatcgagaggaactgtactcgaggagctgtacttaaggaactacacccgaggagcctcatccacacctggacctgatttagatgatgagattctggactttgagctgatgctgtaatgggatgagacttttggggatcttgggaggggggtgagtgtattttgcatgtgggagggacgtgaatcattgggggccagagggcagac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF584 66 99.0 Highly correlated
2 ZNF707 14 74.0 Weakly correlated
3 ZNF479 10 6.4 Weakly correlated
4 ZNF382 9 99.0 Highly correlated
5 ZNF263 8 180.0 Weakly correlated
6 ZNF766 7 43.0 Weakly correlated
7 ZNF679 7 28.9 Weakly correlated
8 ZIM3 6 87.0 Moderately correlated
9 ZNF589 4 28.9 Weakly correlated
10 ZNF317 4 99.0 Highly correlated
11 ZNF528 3 43.0 Weakly correlated
12 ZNF723 3 15.2 Weakly correlated
13 ZNF680 3 28.9 Weakly correlated
14 ZNF534 3 19.6 Weakly correlated
15 ZNF320 3 28.9 Weakly correlated
16 ZNF287 2 99.0 Highly correlated
17 ZNF793 2 99.0 Highly correlated
18 ZNF75D 2 94.0 Moderately correlated
19 ZNF100 2 28.9 Weakly correlated
20 ZNF175 2 94.0 Moderately correlated
21 ZNF182 2 99.0 Highly correlated
22 ZNF394 2 99.0 Highly correlated
23 ZNF140 1 99.0 Highly correlated
24 ZNF846 1 74.0 Weakly correlated
25 ZNF304 1 99.0 Highly correlated
26 ZNF778 1 74.0 Weakly correlated
27 ZKSCAN1 1 160.0 Weakly correlated
28 ZNF274 1 99.0 Highly correlated
29 ZKSCAN8 1 160.0 Weakly correlated
30 ZNF701 1 28.9 Weakly correlated
31 ZNF682 1 28.9 Weakly correlated
32 ZNF101 1 43.0 Weakly correlated
33 ZFP57 1 87.0 Moderately correlated
34 ZNF677 1 99.0 Highly correlated
35 ZNF597 1 94.0 Moderately correlated
36 ZNF257 1 0.0 Weakly correlated
37 ZNF486 1 8.6 Weakly correlated
38 ZNF573 1 94.0 Moderately correlated
39 ZNF563 1 28.9 Weakly correlated
40 ZNF558 1 99.0 Highly correlated
41 ZNF554 1 99.0 Highly correlated
42 ZNF197 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 9 6.4 Weakly correlated
2 ZNF707 4 74.0 Weakly correlated
3 ZNF263 3 180.0 Weakly correlated
4 ZNF584 3 99.0 Highly correlated
5 ZNF528 3 43.0 Weakly correlated
6 ZIM3 2 87.0 Moderately correlated
7 ZNF679 2 28.9 Weakly correlated
8 ZNF534 2 19.6 Weakly correlated
9 ZNF766 2 43.0 Weakly correlated
10 ZNF680 1 28.9 Weakly correlated
11 ZNF563 1 28.9 Weakly correlated
12 ZNF182 1 99.0 Highly correlated
13 ZNF677 1 99.0 Highly correlated
14 ZNF573 1 94.0 Moderately correlated
15 ZNF317 1 99.0 Highly correlated
16 ZNF793 1 99.0 Highly correlated
17 ZNF287 1 99.0 Highly correlated
18 ZNF75D 1 94.0 Moderately correlated
19 ZNF394 1 99.0 Highly correlated
20 ZNF140 1 99.0 Highly correlated
21 ZNF101 1 43.0 Weakly correlated
22 ZNF100 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats