ZRdb KZFP & Repeats
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LTR_MLT1E3

  • Name
    MLT1E3
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001129
Description :

Note that a full-length ERV-MaLR (Mammalian apparent LTRretrotransposon) element is derived from an ERV (Endogenous Retrovirus),but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggtaggcagaattctaagatggcccccaagattcccggcccctggtgtacacacaccttctcccagttattcaatcaaacactaatctaggtgctgctgtgaagggattttgcagatgtaattaaggtcccaaatcagttgaccttaagatagggagattatcctgggtgggcctgacctaatcacgtgagcccttaaaagggactgggctcttcctggagaaagagattcgaagcgtgagagggattcgacgcgagggagattctccgttgctggctttgaagatggagggggccacgtggcaaggaatgcgggcggcctctaggagctgagagcggcccccggctgacagccagcaaggaaacggggacctcagtcctacaaccgcaaggaactgaattctgccaacaacctgaatgagcttggaagcggaccctgagctccagatgagaacncagcccggccgacaccttgatttcagccttgtgagaccctgagcagagaacccagccacgccgtgcccggacttctgacctacagaactgtgagctaataaatgggtgttgttttaagccgctaagtttgtggtaatttgttacgcagcaatagaaaactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF30 164 94.0 Moderately correlated
2 ZIM3 95 87.0 Moderately correlated
3 ZNF382 70 99.0 Highly correlated
4 ZNF680 36 28.9 Weakly correlated
5 ZNF766 33 43.0 Weakly correlated
6 ZNF263 31 180.0 Weakly correlated
7 ZNF394 23 99.0 Highly correlated
8 ZNF543 22 99.0 Highly correlated
9 ZNF679 19 28.9 Weakly correlated
10 ZNF317 16 99.0 Highly correlated
11 ZNF18 15 160.0 Weakly correlated
12 ZKSCAN1 13 160.0 Weakly correlated
13 ZNF589 13 28.9 Weakly correlated
14 ZNF723 11 15.2 Weakly correlated
15 ZFP37 10 99.0 Highly correlated
16 ZNF101 10 43.0 Weakly correlated
17 ZNF175 10 94.0 Moderately correlated
18 ZNF479 10 6.4 Weakly correlated
19 ZKSCAN8 9 160.0 Weakly correlated
20 ZNF274 9 99.0 Highly correlated
21 ZNF485 9 94.0 Moderately correlated
22 ZNF534 9 19.6 Weakly correlated
23 ZNF558 9 99.0 Highly correlated
24 ZNF181 8 94.0 Moderately correlated
25 ZNF75D 8 94.0 Moderately correlated
26 ZFP69B 7 99.0 Highly correlated
27 ZNF197 7 99.0 Highly correlated
28 ZNF2 7 99.0 Highly correlated
29 ZNF597 7 94.0 Moderately correlated
30 ZNF705D 7 28.9 Weakly correlated
31 ZFP57 6 87.0 Moderately correlated
32 ZNF320 6 28.9 Weakly correlated
33 ZNF324 6 99.0 Highly correlated
34 ZNF554 6 99.0 Highly correlated
35 ZNF705B 6 28.9 Weakly correlated
36 ZNF304 5 99.0 Highly correlated
37 ZNF528 5 43.0 Weakly correlated
38 ZNF584 5 99.0 Highly correlated
39 ZNF735 5 28.9 Weakly correlated
40 ZNF257 4 0.0 Weakly correlated
41 ZNF506 4 28.9 Weakly correlated
42 ZNF793 4 99.0 Highly correlated
43 ZNF140 3 99.0 Highly correlated
44 ZNF560 3 43.0 Weakly correlated
45 ZNF682 3 28.9 Weakly correlated
46 ZNF772 3 94.0 Moderately correlated
47 ZNF92 3 28.9 Weakly correlated
48 ZFP30 2 99.0 Highly correlated
49 ZKSCAN5 2 160.0 Weakly correlated
50 ZNF141 2 43.0 Weakly correlated
51 ZNF177 2 94.0 Moderately correlated
52 ZNF182 2 99.0 Highly correlated
53 ZNF230 2 28.9 Weakly correlated
54 ZNF234 2 99.0 Highly correlated
55 ZNF264 2 99.0 Highly correlated
56 ZNF284 2 43.0 Weakly correlated
57 ZNF28 2 28.9 Weakly correlated
58 ZNF418 2 43.0 Weakly correlated
59 ZNF420 2 94.0 Moderately correlated
60 ZNF44 2 43.0 Weakly correlated
61 ZNF471 2 94.0 Moderately correlated
62 ZNF486 2 8.6 Weakly correlated
63 ZNF510 2 99.0 Highly correlated
64 ZNF559 2 74.0 Weakly correlated
65 ZNF599 2 99.0 Highly correlated
66 ZNF610 2 28.9 Weakly correlated
67 ZNF699 2 99.0 Highly correlated
68 ZNF701 2 28.9 Weakly correlated
69 ZNF705E 2 0.0 Weakly correlated
70 ZNF777 2 319.0 Weakly correlated
71 ZNF852 2 94.0 Moderately correlated
72 ZNF93 2 8.6 Weakly correlated
73 RBAK 1 99.0 Highly correlated
74 ZNF100 1 28.9 Weakly correlated
75 ZNF12 1 99.0 Highly correlated
76 ZNF133 1 99.0 Highly correlated
77 ZNF135 1 94.0 Moderately correlated
78 ZNF157 1 99.0 Highly correlated
79 ZNF184 1 99.0 Highly correlated
80 ZNF189 1 99.0 Highly correlated
81 ZNF222 1 43.0 Weakly correlated
82 ZNF250 1 99.0 Highly correlated
83 ZNF251 1 94.0 Moderately correlated
84 ZNF26 1 99.0 Highly correlated
85 ZNF286A 1 160.0 Weakly correlated
86 ZNF302 1 43.0 Weakly correlated
87 ZNF33B 1 99.0 Highly correlated
88 ZNF429 1 28.9 Weakly correlated
89 ZNF432 1 99.0 Highly correlated
90 ZNF442 1 43.0 Weakly correlated
91 ZNF445 1 99.0 Highly correlated
92 ZNF468 1 28.9 Weakly correlated
93 ZNF490 1 43.0 Weakly correlated
94 ZNF500 1 160.0 Weakly correlated
95 ZNF519 1 19.6 Weakly correlated
96 ZNF551 1 94.0 Moderately correlated
97 ZNF557 1 15.2 Weakly correlated
98 ZNF563 1 28.9 Weakly correlated
99 ZNF585A 1 99.0 Highly correlated
100 ZNF585B 1 99.0 Highly correlated
101 ZNF587B 1 8.6 Weakly correlated
102 ZNF624 1 99.0 Highly correlated
103 ZNF627 1 74.0 Weakly correlated
104 ZNF66 1 0.0 Weakly correlated
105 ZNF674 1 99.0 Highly correlated
106 ZNF716 1 19.6 Weakly correlated
107 ZNF718 1 19.6 Weakly correlated
108 ZNF736 1 43.0 Weakly correlated
109 ZNF761 1 19.6 Weakly correlated
110 ZNF763 1 15.2 Weakly correlated
111 ZNF765 1 8.6 Weakly correlated
112 ZNF778 1 74.0 Weakly correlated
113 ZNF799 1 43.0 Weakly correlated
114 ZNF808 1 19.6 Weakly correlated
115 ZNF813 1 28.9 Weakly correlated
116 ZNF823 1 43.0 Weakly correlated
117 ZNF850 1 28.9 Weakly correlated
118 ZNF878 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF30 67 94.0 Moderately correlated
2 ZIM3 35 87.0 Moderately correlated
3 ZNF263 10 180.0 Weakly correlated
4 ZNF181 7 94.0 Moderately correlated
5 ZNF680 6 28.9 Weakly correlated
6 ZNF317 6 99.0 Highly correlated
7 ZNF485 6 94.0 Moderately correlated
8 ZNF534 5 19.6 Weakly correlated
9 ZNF723 5 15.2 Weakly correlated
10 ZNF304 5 99.0 Highly correlated
11 ZNF101 4 43.0 Weakly correlated
12 ZNF479 4 6.4 Weakly correlated
13 ZNF18 4 160.0 Weakly correlated
14 ZNF589 3 28.9 Weakly correlated
15 ZNF597 3 94.0 Moderately correlated
16 ZNF75D 3 94.0 Moderately correlated
17 ZNF543 2 99.0 Highly correlated
18 ZNF197 2 99.0 Highly correlated
19 ZNF382 2 99.0 Highly correlated
20 ZNF701 2 28.9 Weakly correlated
21 ZNF175 2 94.0 Moderately correlated
22 ZNF679 2 28.9 Weakly correlated
23 ZNF140 2 99.0 Highly correlated
24 ZKSCAN5 2 160.0 Weakly correlated
25 ZNF528 1 43.0 Weakly correlated
26 ZNF44 1 43.0 Weakly correlated
27 ZNF394 1 99.0 Highly correlated
28 ZNF610 1 28.9 Weakly correlated
29 ZNF705B 1 28.9 Weakly correlated
30 ZNF705D 1 28.9 Weakly correlated
31 ZNF778 1 74.0 Weakly correlated
32 ZNF274 1 99.0 Highly correlated
33 ZNF506 1 28.9 Weakly correlated
34 ZNF766 1 43.0 Weakly correlated
35 ZNF793 1 99.0 Highly correlated
36 ZNF735 1 28.9 Weakly correlated
37 ZNF558 1 99.0 Highly correlated
38 ZFP57 1 87.0 Moderately correlated
39 ZNF320 1 28.9 Weakly correlated
40 ZNF674 1 99.0 Highly correlated
41 ZNF584 1 99.0 Highly correlated
42 ZNF429 1 28.9 Weakly correlated
43 ZNF264 1 99.0 Highly correlated
44 ZNF257 1 0.0 Weakly correlated
45 ZNF157 1 99.0 Highly correlated
46 ZNF141 1 43.0 Weakly correlated
47 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats