ZRdb KZFP & Repeats
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LTR_MLT1E2

  • Name
    MLT1E2
  • Repbase
    MLT1E2
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001007
Description :

MLT1E2 (Mammalian LTR Transposon) has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element isderived from an ERV (Endogenous Retrovirus), but only contains the Gaggene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggtaggcagaatggccccccaaagatgtccacgccctaatccccggaacctgtgaatatgttacgttacatggcaaaagggactttgcagatgtaattaaggttacggaccttaaaatagggagattatcctggattatccgggtgggcccaatctaatcacatgagcccttaaaagcagagaactttctccggctggagtcagagagatgcggcagaaggggaagtcagagagattcgaagcgtgagaaggactcgacgcgccgttgctggctttgaagatggagggggccacgtgncaaggaatgcgggcggcctctaggagctgagagcggcccccggctgacagccagcaaggaaacggggacctcagtcctacaaccgcaaggaactgaattctgccaacaacctgaatgagcttggaagcggattcttccccagagcctccaganaagagcncagcccngccgacaccttgatttcggccttgtgagaccctgagcagagaanccagccgagcccacccggacttctgacctacagaactgtgagataataaatntgtgttgttttaagccgctaagtttgtggtaatttgttacggcagcaatagaaaactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF30 379 94.0 Moderately correlated
2 ZIM3 147 87.0 Moderately correlated
3 ZNF382 128 99.0 Highly correlated
4 ZNF766 89 43.0 Weakly correlated
5 ZNF263 74 180.0 Weakly correlated
6 ZNF680 48 28.9 Weakly correlated
7 ZNF394 46 99.0 Highly correlated
8 ZNF679 33 28.9 Weakly correlated
9 ZNF181 32 94.0 Moderately correlated
10 ZNF175 29 94.0 Moderately correlated
11 ZNF18 29 160.0 Weakly correlated
12 ZFP37 28 99.0 Highly correlated
13 ZNF589 28 28.9 Weakly correlated
14 ZFP69B 27 99.0 Highly correlated
15 ZNF101 25 43.0 Weakly correlated
16 ZNF534 25 19.6 Weakly correlated
17 ZNF317 24 99.0 Highly correlated
18 ZNF479 22 6.4 Weakly correlated
19 ZNF558 20 99.0 Highly correlated
20 ZNF2 19 99.0 Highly correlated
21 ZKSCAN8 17 160.0 Weakly correlated
22 ZNF610 16 28.9 Weakly correlated
23 ZNF793 16 99.0 Highly correlated
24 ZNF324 15 99.0 Highly correlated
25 ZNF707 14 74.0 Weakly correlated
26 ZNF723 13 15.2 Weakly correlated
27 ZKSCAN1 12 160.0 Weakly correlated
28 ZNF584 12 99.0 Highly correlated
29 ZNF274 11 99.0 Highly correlated
30 ZNF554 11 99.0 Highly correlated
31 ZNF304 10 99.0 Highly correlated
32 ZNF543 10 99.0 Highly correlated
33 ZNF597 10 94.0 Moderately correlated
34 ZNF140 9 99.0 Highly correlated
35 ZNF197 9 99.0 Highly correlated
36 ZNF320 9 28.9 Weakly correlated
37 ZNF506 9 28.9 Weakly correlated
38 ZNF705D 9 28.9 Weakly correlated
39 ZNF792 9 94.0 Moderately correlated
40 ZNF528 8 43.0 Weakly correlated
41 ZNF257 7 0.0 Weakly correlated
42 ZNF28 7 28.9 Weakly correlated
43 ZNF519 7 19.6 Weakly correlated
44 ZNF705B 7 28.9 Weakly correlated
45 ZNF251 6 94.0 Moderately correlated
46 ZNF429 6 28.9 Weakly correlated
47 ZNF264 5 99.0 Highly correlated
48 ZNF486 5 8.6 Weakly correlated
49 ZNF490 5 43.0 Weakly correlated
50 ZNF641 5 99.0 Highly correlated
51 ZFP57 4 87.0 Moderately correlated
52 ZNF202 4 160.0 Weakly correlated
53 ZNF350 4 99.0 Highly correlated
54 ZNF44 4 43.0 Weakly correlated
55 ZNF485 4 94.0 Moderately correlated
56 ZNF549 4 87.0 Moderately correlated
57 ZNF695 4 28.9 Weakly correlated
58 ZNF701 4 28.9 Weakly correlated
59 ZNF735 4 28.9 Weakly correlated
60 ZNF823 4 43.0 Weakly correlated
61 ZNF92 4 28.9 Weakly correlated
62 ZNF273 3 28.9 Weakly correlated
63 ZNF483 3 99.0 Highly correlated
64 ZNF563 3 28.9 Weakly correlated
65 ZNF75D 3 94.0 Moderately correlated
66 ZNF778 3 74.0 Weakly correlated
67 ZFP28 2 99.0 Highly correlated
68 ZKSCAN5 2 160.0 Weakly correlated
69 ZNF136 2 74.0 Weakly correlated
70 ZNF160 2 74.0 Weakly correlated
71 ZNF182 2 99.0 Highly correlated
72 ZNF189 2 99.0 Highly correlated
73 ZNF254 2 43.0 Weakly correlated
74 ZNF287 2 99.0 Highly correlated
75 ZNF302 2 43.0 Weakly correlated
76 ZNF334 2 99.0 Highly correlated
77 ZNF343 2 74.0 Weakly correlated
78 ZNF418 2 43.0 Weakly correlated
79 ZNF41 2 99.0 Highly correlated
80 ZNF425 2 94.0 Moderately correlated
81 ZNF436 2 180.0 Weakly correlated
82 ZNF43 2 43.0 Weakly correlated
83 ZNF441 2 43.0 Weakly correlated
84 ZNF468 2 28.9 Weakly correlated
85 ZNF471 2 94.0 Moderately correlated
86 ZNF510 2 99.0 Highly correlated
87 ZNF585A 2 99.0 Highly correlated
88 ZNF596 2 94.0 Moderately correlated
89 ZNF682 2 28.9 Weakly correlated
90 ZNF805 2 99.0 Highly correlated
91 ZNF84 2 99.0 Highly correlated
92 ZNF8 2 99.0 Highly correlated
93 ZFP30 1 99.0 Highly correlated
94 ZFP69 1 99.0 Highly correlated
95 ZFP82 1 99.0 Highly correlated
96 ZNF132 1 94.0 Moderately correlated
97 ZNF141 1 43.0 Weakly correlated
98 ZNF169 1 94.0 Moderately correlated
99 ZNF224 1 69.0 Weakly correlated
100 ZNF225 1 74.0 Weakly correlated
101 ZNF248 1 99.0 Highly correlated
102 ZNF283 1 99.0 Highly correlated
103 ZNF284 1 43.0 Weakly correlated
104 ZNF331 1 94.0 Moderately correlated
105 ZNF337 1 43.0 Weakly correlated
106 ZNF430 1 19.6 Weakly correlated
107 ZNF445 1 99.0 Highly correlated
108 ZNF544 1 0.0 Weakly correlated
109 ZNF573 1 94.0 Moderately correlated
110 ZNF578 1 15.2 Weakly correlated
111 ZNF616 1 43.0 Weakly correlated
112 ZNF665 1 28.9 Weakly correlated
113 ZNF671 1 94.0 Moderately correlated
114 ZNF675 1 8.6 Weakly correlated
115 ZNF677 1 99.0 Highly correlated
116 ZNF716 1 19.6 Weakly correlated
117 ZNF730 1 19.6 Weakly correlated
118 ZNF777 1 319.0 Weakly correlated
119 ZNF780A 1 43.0 Weakly correlated
120 ZNF786 1 99.0 Highly correlated
121 ZNF789 1 99.0 Highly correlated
122 ZNF808 1 19.6 Weakly correlated
123 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF30 145 94.0 Moderately correlated
2 ZIM3 78 87.0 Moderately correlated
3 ZNF181 27 94.0 Moderately correlated
4 ZNF534 14 19.6 Weakly correlated
5 ZNF263 14 180.0 Weakly correlated
6 ZNF680 13 28.9 Weakly correlated
7 ZNF479 12 6.4 Weakly correlated
8 ZNF304 10 99.0 Highly correlated
9 ZNF793 8 99.0 Highly correlated
10 ZNF766 7 43.0 Weakly correlated
11 ZNF506 7 28.9 Weakly correlated
12 ZNF317 5 99.0 Highly correlated
13 ZNF679 5 28.9 Weakly correlated
14 ZFP69B 5 99.0 Highly correlated
15 ZNF723 5 15.2 Weakly correlated
16 ZNF589 4 28.9 Weakly correlated
17 ZNF257 4 0.0 Weakly correlated
18 ZNF597 3 94.0 Moderately correlated
19 ZNF382 3 99.0 Highly correlated
20 ZNF483 3 99.0 Highly correlated
21 ZNF823 2 43.0 Weakly correlated
22 ZNF75D 2 94.0 Moderately correlated
23 ZNF175 2 94.0 Moderately correlated
24 ZNF585A 2 99.0 Highly correlated
25 ZNF735 2 28.9 Weakly correlated
26 ZNF471 2 94.0 Moderately correlated
27 ZNF44 2 43.0 Weakly correlated
28 ZNF101 2 43.0 Weakly correlated
29 ZNF805 2 99.0 Highly correlated
30 ZNF287 2 99.0 Highly correlated
31 ZNF695 2 28.9 Weakly correlated
32 ZNF558 2 99.0 Highly correlated
33 ZNF485 2 94.0 Moderately correlated
34 ZNF41 1 99.0 Highly correlated
35 ZFP37 1 99.0 Highly correlated
36 ZNF682 1 28.9 Weakly correlated
37 ZNF225 1 74.0 Weakly correlated
38 ZNF28 1 28.9 Weakly correlated
39 ZNF549 1 87.0 Moderately correlated
40 ZNF2 1 99.0 Highly correlated
41 ZNF430 1 19.6 Weakly correlated
42 ZNF343 1 74.0 Weakly correlated
43 ZNF202 1 160.0 Weakly correlated
44 ZNF490 1 43.0 Weakly correlated
45 ZFP69 1 99.0 Highly correlated
46 ZFP82 1 99.0 Highly correlated
47 ZKSCAN1 1 160.0 Weakly correlated
48 ZKSCAN5 1 160.0 Weakly correlated
49 ZKSCAN8 1 160.0 Weakly correlated
50 ZNF140 1 99.0 Highly correlated
51 ZNF141 1 43.0 Weakly correlated
52 ZNF264 1 99.0 Highly correlated
53 ZNF334 1 99.0 Highly correlated
54 ZNF350 1 99.0 Highly correlated
55 ZNF573 1 94.0 Moderately correlated
56 ZNF18 1 160.0 Weakly correlated
57 ZNF707 1 74.0 Weakly correlated
58 ZNF789 1 99.0 Highly correlated
59 ZNF331 1 94.0 Moderately correlated
60 ZNF584 1 99.0 Highly correlated
61 ZNF418 1 43.0 Weakly correlated
62 ZNF519 1 19.6 Weakly correlated
63 ZNF610 1 28.9 Weakly correlated
64 ZNF786 1 99.0 Highly correlated
65 ZNF283 1 99.0 Highly correlated
66 ZNF429 1 28.9 Weakly correlated
67 ZNF468 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF479 6.4 Weakly correlated
2 ZNF534 19.6 Weakly correlated
3 ZNF793 99.0 Highly correlated