ZRdb KZFP & Repeats
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LTR_MLT1E1A

  • Name
    MLT1E1A
  • Repbase
    MLT1E1A
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001128
Description :

Note that a full-length ERV-MaLR (Mammalian apparent LTRretrotransposon) element is derived from an ERV (Endogenous Retrovirus),but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggtaggcagaattctaagatggcccccaagattcccgccccctggtgtacacgccctgtataatcccctccccttgagtgtgggcgggacctgtgaatatgatgggatatcactcccgtgattaggttacattatatggcaaaggtgaagggattttgcagatgtaattaaggtccctaatcagttgactttgagttaatcaaaagggagattatcctgggtgggcctgacctaatcaggtgagcccttaaaagaggcatgggccctccagagagaagaacagagagattctcctgctggccttgaagaagcaagctgccatgttgtgagagggcctatggagagggccacgtggcaagganctgngggcggcctctaggagctgagagcggcccccggccgacagccagcaagaaaacggggacctcagtcctacagccgcaaggaantgaattctgccaacaacctgaatgagcttggaagnggaccctaagcctcagatgagaacgcagccctagccgacaccttgattncagccttgtgagaccctgagcagaggacccagctaagccgtgcccggactcctgacccacagaaactgtgagataataaatgtgtgttgttttaagccgctaagtttgtggtaatttgttacgcagcaatagaaaactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 141 99.0 Highly correlated
2 ZNF30 140 94.0 Moderately correlated
3 ZNF304 125 99.0 Highly correlated
4 ZIM3 116 87.0 Moderately correlated
5 ZNF534 54 19.6 Weakly correlated
6 ZNF766 54 43.0 Weakly correlated
7 ZNF679 41 28.9 Weakly correlated
8 ZNF317 38 99.0 Highly correlated
9 ZNF394 36 99.0 Highly correlated
10 ZNF263 34 180.0 Weakly correlated
11 ZNF589 24 28.9 Weakly correlated
12 ZNF554 23 99.0 Highly correlated
13 ZNF680 21 28.9 Weakly correlated
14 ZFP37 20 99.0 Highly correlated
15 ZNF175 19 94.0 Moderately correlated
16 ZNF543 18 99.0 Highly correlated
17 ZNF723 18 15.2 Weakly correlated
18 ZNF793 18 99.0 Highly correlated
19 ZKSCAN1 17 160.0 Weakly correlated
20 ZFP69B 16 99.0 Highly correlated
21 ZNF18 15 160.0 Weakly correlated
22 ZNF479 15 6.4 Weakly correlated
23 ZNF2 14 99.0 Highly correlated
24 ZNF705B 14 28.9 Weakly correlated
25 ZKSCAN8 12 160.0 Weakly correlated
26 ZNF320 12 28.9 Weakly correlated
27 ZNF324 12 99.0 Highly correlated
28 ZNF197 10 99.0 Highly correlated
29 ZNF701 10 28.9 Weakly correlated
30 ZNF101 9 43.0 Weakly correlated
31 ZNF181 9 94.0 Moderately correlated
32 ZNF257 9 0.0 Weakly correlated
33 ZNF490 9 43.0 Weakly correlated
34 ZNF584 9 99.0 Highly correlated
35 ZNF705D 8 28.9 Weakly correlated
36 ZNF75D 8 94.0 Moderately correlated
37 ZNF141 7 43.0 Weakly correlated
38 ZNF486 7 8.6 Weakly correlated
39 ZNF506 7 28.9 Weakly correlated
40 ZNF92 7 28.9 Weakly correlated
41 ZNF182 6 99.0 Highly correlated
42 ZNF528 6 43.0 Weakly correlated
43 ZNF549 6 87.0 Moderately correlated
44 ZNF610 6 28.9 Weakly correlated
45 ZNF682 6 28.9 Weakly correlated
46 ZFP57 5 87.0 Moderately correlated
47 ZNF133 5 99.0 Highly correlated
48 ZNF140 5 99.0 Highly correlated
49 ZNF251 5 94.0 Moderately correlated
50 ZNF274 5 99.0 Highly correlated
51 ZNF169 4 94.0 Moderately correlated
52 ZNF547 4 74.0 Weakly correlated
53 ZNF558 4 99.0 Highly correlated
54 ZNF202 3 160.0 Weakly correlated
55 ZNF429 3 28.9 Weakly correlated
56 ZNF264 2 99.0 Highly correlated
57 ZNF28 2 28.9 Weakly correlated
58 ZNF347 2 43.0 Weakly correlated
59 ZNF425 2 94.0 Moderately correlated
60 ZNF485 2 94.0 Moderately correlated
61 ZNF597 2 94.0 Moderately correlated
62 ZNF695 2 28.9 Weakly correlated
63 ZNF700 2 28.9 Weakly correlated
64 ZNF735 2 28.9 Weakly correlated
65 ZNF772 2 94.0 Moderately correlated
66 ZNF786 2 99.0 Highly correlated
67 ZNF878 2 43.0 Weakly correlated
68 ZNF879 2 99.0 Highly correlated
69 ZFP69 1 99.0 Highly correlated
70 ZIK1 1 87.0 Moderately correlated
71 ZNF10 1 99.0 Highly correlated
72 ZNF12 1 99.0 Highly correlated
73 ZNF17 1 69.0 Weakly correlated
74 ZNF222 1 43.0 Weakly correlated
75 ZNF26 1 99.0 Highly correlated
76 ZNF273 1 28.9 Weakly correlated
77 ZNF282 1 319.0 Weakly correlated
78 ZNF284 1 43.0 Weakly correlated
79 ZNF418 1 43.0 Weakly correlated
80 ZNF436 1 180.0 Weakly correlated
81 ZNF441 1 43.0 Weakly correlated
82 ZNF445 1 99.0 Highly correlated
83 ZNF471 1 94.0 Moderately correlated
84 ZNF483 1 99.0 Highly correlated
85 ZNF500 1 160.0 Weakly correlated
86 ZNF519 1 19.6 Weakly correlated
87 ZNF560 1 43.0 Weakly correlated
88 ZNF616 1 43.0 Weakly correlated
89 ZNF627 1 74.0 Weakly correlated
90 ZNF667 1 99.0 Highly correlated
91 ZNF681 1 28.9 Weakly correlated
92 ZNF684 1 99.0 Highly correlated
93 ZNF716 1 19.6 Weakly correlated
94 ZNF75A 1 94.0 Moderately correlated
95 ZNF780A 1 43.0 Weakly correlated
96 ZNF799 1 43.0 Weakly correlated
97 ZNF808 1 19.6 Weakly correlated
98 ZNF823 1 43.0 Weakly correlated
99 ZNF845 1 28.9 Weakly correlated
100 ZNF84 1 99.0 Highly correlated
101 ZNF8 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF304 106 99.0 Highly correlated
2 ZNF30 54 94.0 Moderately correlated
3 ZIM3 52 87.0 Moderately correlated
4 ZNF534 43 19.6 Weakly correlated
5 ZNF263 9 180.0 Weakly correlated
6 ZNF723 9 15.2 Weakly correlated
7 ZNF181 9 94.0 Moderately correlated
8 ZNF479 7 6.4 Weakly correlated
9 ZNF793 7 99.0 Highly correlated
10 ZNF141 6 43.0 Weakly correlated
11 ZNF382 5 99.0 Highly correlated
12 ZNF257 5 0.0 Weakly correlated
13 ZNF18 4 160.0 Weakly correlated
14 ZNF766 4 43.0 Weakly correlated
15 ZNF543 4 99.0 Highly correlated
16 ZNF680 4 28.9 Weakly correlated
17 ZNF679 4 28.9 Weakly correlated
18 ZNF528 4 43.0 Weakly correlated
19 ZNF506 4 28.9 Weakly correlated
20 ZNF75D 4 94.0 Moderately correlated
21 ZNF705D 4 28.9 Weakly correlated
22 ZNF317 4 99.0 Highly correlated
23 ZNF133 3 99.0 Highly correlated
24 ZFP37 3 99.0 Highly correlated
25 ZNF554 3 99.0 Highly correlated
26 ZNF705B 2 28.9 Weakly correlated
27 ZNF589 2 28.9 Weakly correlated
28 ZNF490 2 43.0 Weakly correlated
29 ZNF549 2 87.0 Moderately correlated
30 ZNF101 2 43.0 Weakly correlated
31 ZNF429 2 28.9 Weakly correlated
32 ZNF2 2 99.0 Highly correlated
33 ZKSCAN8 2 160.0 Weakly correlated
34 ZKSCAN1 1 160.0 Weakly correlated
35 ZNF264 1 99.0 Highly correlated
36 ZNF273 1 28.9 Weakly correlated
37 ZNF483 1 99.0 Highly correlated
38 ZNF486 1 8.6 Weakly correlated
39 ZIK1 1 87.0 Moderately correlated
40 ZNF320 1 28.9 Weakly correlated
41 ZNF684 1 99.0 Highly correlated
42 ZFP57 1 87.0 Moderately correlated
43 ZNF140 1 99.0 Highly correlated
44 ZNF282 1 319.0 Weakly correlated
45 ZNF202 1 160.0 Weakly correlated
46 ZNF251 1 94.0 Moderately correlated
47 ZNF735 1 28.9 Weakly correlated
48 ZNF667 1 99.0 Highly correlated
49 ZNF485 1 94.0 Moderately correlated
50 ZNF324 1 99.0 Highly correlated
51 ZNF182 1 99.0 Highly correlated
52 ZNF169 1 94.0 Moderately correlated
53 ZNF616 1 43.0 Weakly correlated
54 ZNF716 1 19.6 Weakly correlated
55 ZNF175 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF141 43.0 Weakly correlated