ZRdb KZFP & Repeats
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LTR_MLT1E1

  • Name
    MLT1E1
  • Repbase
    MLT1E1
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001006
Description :

MLT1E1 (Mammalian LTR Transposon) has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element isderived from an ERV (Endogenous Retrovirus), but only contains the Gaggene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggtaggcagaattctaagatggcccccaagattcccaccccctggtgtacatgccctgtataatcccctccccttgagtgtgggcgggacctgtgaatatgatgggatatcactcctgtgattaggttacgttatatggcaaaggtgaagggattttgcagatgtaattaaggtccctaatcagttgactttgagttaatcaaaagggagattatcctgggtgggcctgacctaatcaggtgagccctttaaaagagggtctggaggtctttctgaagaagtcagagagattcgaagcagcagagatgctctcctgctggccttgaagaagcaagctgccatgttgtggagagggccacgtggcagggaacngcgggcggcctctaggagctgagggcctcagtcctacagccgcaaggaantgaattctgccaacaacctgagtgagcttggaagnggaccctgagcctccagatgagaacgcagccccggccgacaccttgattncagccttgtgagaccctgagcagaggacccagctaagccgtgcccggactcctgacccacggaaactgtgagataataaatgtgtgttgttttaagccgctaagtttgtggtaatttgttacgcagcaatagaaaactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF304 32 99.0 Highly correlated
2 ZNF30 28 94.0 Moderately correlated
3 ZIM3 27 87.0 Moderately correlated
4 ZNF382 15 99.0 Highly correlated
5 ZNF766 13 43.0 Weakly correlated
6 ZNF263 11 180.0 Weakly correlated
7 ZNF534 10 19.6 Weakly correlated
8 ZNF679 10 28.9 Weakly correlated
9 ZKSCAN1 6 160.0 Weakly correlated
10 ZNF317 6 99.0 Highly correlated
11 ZNF140 6 99.0 Highly correlated
12 ZNF257 6 0.0 Weakly correlated
13 ZNF543 5 99.0 Highly correlated
14 ZNF589 5 28.9 Weakly correlated
15 ZNF479 4 6.4 Weakly correlated
16 ZNF197 4 99.0 Highly correlated
17 ZNF705B 4 28.9 Weakly correlated
18 ZNF175 4 94.0 Moderately correlated
19 ZNF705D 3 28.9 Weakly correlated
20 ZNF483 3 99.0 Highly correlated
21 ZNF585B 3 99.0 Highly correlated
22 ZNF141 3 43.0 Weakly correlated
23 ZNF133 3 99.0 Highly correlated
24 ZNF320 3 28.9 Weakly correlated
25 ZNF549 3 87.0 Moderately correlated
26 ZNF793 3 99.0 Highly correlated
27 ZIK1 3 87.0 Moderately correlated
28 ZNF394 3 99.0 Highly correlated
29 ZNF75D 2 94.0 Moderately correlated
30 ZFP69B 2 99.0 Highly correlated
31 ZNF506 2 28.9 Weakly correlated
32 ZNF92 2 28.9 Weakly correlated
33 ZNF682 2 28.9 Weakly correlated
34 ZNF554 2 99.0 Highly correlated
35 ZNF735 2 28.9 Weakly correlated
36 ZNF680 2 28.9 Weakly correlated
37 ZNF425 2 94.0 Moderately correlated
38 ZNF331 2 94.0 Moderately correlated
39 ZKSCAN8 2 160.0 Weakly correlated
40 ZNF101 2 43.0 Weakly correlated
41 ZNF181 2 94.0 Moderately correlated
42 ZNF18 2 160.0 Weakly correlated
43 ZNF597 1 94.0 Moderately correlated
44 ZNF93 1 8.6 Weakly correlated
45 ZFP37 1 99.0 Highly correlated
46 ZNF808 1 19.6 Weakly correlated
47 ZKSCAN5 1 160.0 Weakly correlated
48 ZNF17 1 69.0 Weakly correlated
49 ZNF189 1 99.0 Highly correlated
50 ZNF701 1 28.9 Weakly correlated
51 ZNF248 1 99.0 Highly correlated
52 ZNF251 1 94.0 Moderately correlated
53 ZNF468 1 28.9 Weakly correlated
54 ZNF273 1 28.9 Weakly correlated
55 ZNF274 1 99.0 Highly correlated
56 ZNF584 1 99.0 Highly correlated
57 ZNF563 1 28.9 Weakly correlated
58 ZNF559 1 74.0 Weakly correlated
59 ZNF2 1 99.0 Highly correlated
60 ZNF324 1 99.0 Highly correlated
61 ZNF528 1 43.0 Weakly correlated
62 ZNF519 1 19.6 Weakly correlated
63 ZNF429 1 28.9 Weakly correlated
64 ZNF490 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF304 28 99.0 Highly correlated
2 ZNF30 14 94.0 Moderately correlated
3 ZIM3 9 87.0 Moderately correlated
4 ZNF534 7 19.6 Weakly correlated
5 ZIK1 3 87.0 Moderately correlated
6 ZNF257 2 0.0 Weakly correlated
7 ZNF317 2 99.0 Highly correlated
8 ZNF181 2 94.0 Moderately correlated
9 ZNF263 2 180.0 Weakly correlated
10 ZNF479 2 6.4 Weakly correlated
11 ZNF141 2 43.0 Weakly correlated
12 ZNF133 2 99.0 Highly correlated
13 ZNF528 1 43.0 Weakly correlated
14 ZFP69B 1 99.0 Highly correlated
15 ZNF735 1 28.9 Weakly correlated
16 ZNF679 1 28.9 Weakly correlated
17 ZNF175 1 94.0 Moderately correlated
18 ZNF705D 1 28.9 Weakly correlated
19 ZNF483 1 99.0 Highly correlated
20 ZNF549 1 87.0 Moderately correlated
21 ZNF101 1 43.0 Weakly correlated
22 ZNF793 1 99.0 Highly correlated
23 ZNF92 1 28.9 Weakly correlated
24 ZNF705B 1 28.9 Weakly correlated
25 ZNF331 1 94.0 Moderately correlated
26 ZNF75D 1 94.0 Moderately correlated
27 ZNF506 1 28.9 Weakly correlated
28 ZNF394 1 99.0 Highly correlated
29 ZKSCAN5 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats