ZRdb KZFP & Repeats
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LTR_MLT1D

  • Name
    MLT1D
  • Repbase
    MLT1D
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001004
Description :

MLT1D (Mammalian LTR Transposon) has 5 bp TSDs, and it an intermediatesubfamily between MLT1C and MLT1E2. Note that a full-length ERV-MaLR(Mammalian apparent LTR retrotransposon) element is derived from an ERV(Endogenous Retrovirus), but only contains the Gag gene (that is, no Polor Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggtaggcagaataatggccccccaaagatgtccacgtcctaatccccggaacctgtgaatatgttaccttacatggcaaaagggactttgcagatgtgattaagttaaggatcttgagatggggagattatcctggattatccgggtgggcccaatgtaatcacaagggtccttataagagggaggcaggagggtcagagtcagagaaggagatgtgacgacggaagcagaggtcggagtgacgacgttgctggctttgaagatggaggaaggggccacgagccaaggaatgcgggcggcctctagaagctggaaaaggcaaggaaacggattctcccctagagcctccagaaggaacgcagccctgccgacaccttgattttagcccagtgagacccatttcggacttctgacctccagaactgtaagataataaatttgtgttgttttaagccactaagtttgtggtaatttgttacagcagcaataggaaactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 26 99.0 Highly correlated
2 ZNF707 25 74.0 Weakly correlated
3 ZNF584 19 99.0 Highly correlated
4 ZNF479 11 6.4 Weakly correlated
5 ZNF793 10 99.0 Highly correlated
6 ZNF317 8 99.0 Highly correlated
7 ZNF263 6 180.0 Weakly correlated
8 ZFP37 6 99.0 Highly correlated
9 ZNF766 5 43.0 Weakly correlated
10 ZNF394 5 99.0 Highly correlated
11 ZNF723 5 15.2 Weakly correlated
12 ZNF175 5 94.0 Moderately correlated
13 ZNF705B 5 28.9 Weakly correlated
14 ZNF589 4 28.9 Weakly correlated
15 ZNF2 4 99.0 Highly correlated
16 ZNF558 4 99.0 Highly correlated
17 ZNF8 4 99.0 Highly correlated
18 ZKSCAN8 3 160.0 Weakly correlated
19 ZNF534 3 19.6 Weakly correlated
20 ZNF585B 2 99.0 Highly correlated
21 ZNF528 2 43.0 Weakly correlated
22 ZNF264 2 99.0 Highly correlated
23 ZNF234 2 99.0 Highly correlated
24 ZNF226 2 99.0 Highly correlated
25 ZNF705D 2 28.9 Weakly correlated
26 ZFP69B 2 99.0 Highly correlated
27 ZNF597 1 94.0 Moderately correlated
28 ZNF586 1 43.0 Weakly correlated
29 ZNF679 1 28.9 Weakly correlated
30 ZNF684 1 99.0 Highly correlated
31 ZNF75D 1 94.0 Moderately correlated
32 ZNF557 1 15.2 Weakly correlated
33 ZNF440 1 28.9 Weakly correlated
34 ZNF257 1 0.0 Weakly correlated
35 ZFP57 1 87.0 Moderately correlated
36 ZKSCAN1 1 160.0 Weakly correlated
37 ZNF101 1 43.0 Weakly correlated
38 ZNF10 1 99.0 Highly correlated
39 ZNF12 1 99.0 Highly correlated
40 ZNF157 1 99.0 Highly correlated
41 ZNF18 1 160.0 Weakly correlated
42 ZNF197 1 99.0 Highly correlated
43 ZNF506 1 28.9 Weakly correlated
44 ZNF284 1 43.0 Weakly correlated
45 ZNF28 1 28.9 Weakly correlated
46 ZNF304 1 99.0 Highly correlated
47 ZNF324 1 99.0 Highly correlated
48 ZNF441 1 43.0 Weakly correlated
49 ZNF471 1 94.0 Moderately correlated
50 ZNF486 1 8.6 Weakly correlated
51 ZNF490 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF707 10 74.0 Weakly correlated
2 ZNF479 9 6.4 Weakly correlated
3 ZNF793 5 99.0 Highly correlated
4 ZNF534 2 19.6 Weakly correlated
5 ZNF766 2 43.0 Weakly correlated
6 ZNF723 2 15.2 Weakly correlated
7 ZNF584 2 99.0 Highly correlated
8 ZNF317 2 99.0 Highly correlated
9 ZNF589 1 28.9 Weakly correlated
10 ZNF586 1 43.0 Weakly correlated
11 ZNF197 1 99.0 Highly correlated
12 ZNF585B 1 99.0 Highly correlated
13 ZFP37 1 99.0 Highly correlated
14 ZNF257 1 0.0 Weakly correlated
15 ZNF597 1 94.0 Moderately correlated
16 ZNF440 1 28.9 Weakly correlated
17 ZNF684 1 99.0 Highly correlated
18 ZNF382 1 99.0 Highly correlated
19 ZNF263 1 180.0 Weakly correlated
20 ZNF12 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats