ZRdb KZFP & Repeats
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LTR_MLT1C

  • Name
    MLT1C
  • Repbase
    MLT1C
  • Type
    LTR
  • Emergence
    94.0 Mya
  • Dfam Id
    DF0001003
Description :

MLT1C (Mammalian LTR Transposon) has 5 bp TSDs. This is an intermediatesubfamily between MLT1B and MLT1D. Note that a full-length ERV-MaLR(Mammalian apparent LTR retrotransposon) element is derived from an ERV(Endogenous Retrovirus), but only contains the Gag gene (that is, no Polor Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttatgggttgaattgtgtccccccaaaattcatatgttgaagtcctaacccccagtacctcagaatgtgaccttatttggaaatagggtcnttgcagatgtaattagttaagatgaggtcatactggagtagggtgggcccctaatccaatatgactggtgtccttataaaaaggggaaatttggacacagacacgcacacagggagaacgccatgtgaagatgaaggcagagatcggggtgatgcntctacaagccaaggaacgccaaagattgccagcaaaccaccagaagctaggagagaggcatggaacagattctccctcacagccctcagaaggaaccaaccctgccgacaccttgatctcggacttctagcctccagaactgtgagacaataaatttctgttgtttaagccacccagtttgtggtactttgttacggcagccctagnaaactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 1321 99.0 Weakly correlated
2 ZNF263 490 180.0 Weakly correlated
3 ZNF766 310 43.0 Weakly correlated
4 ZNF394 307 99.0 Weakly correlated
5 ZFP69B 244 99.0 Weakly correlated
6 ZIM3 236 87.0 Moderately correlated
7 ZNF793 236 99.0 Weakly correlated
8 ZFP37 210 99.0 Weakly correlated
9 ZNF175 202 94.0 Highly correlated
10 ZNF589 185 28.9 Weakly correlated
11 ZNF558 165 99.0 Weakly correlated
12 ZNF679 151 28.9 Weakly correlated
13 ZNF257 145 0.0 Weakly correlated
14 ZNF680 142 28.9 Weakly correlated
15 ZNF584 127 99.0 Weakly correlated
16 ZNF2 126 99.0 Weakly correlated
17 ZNF534 122 19.6 Weakly correlated
18 ZNF479 117 6.4 Weakly correlated
19 ZNF317 108 99.0 Weakly correlated
20 ZNF324 93 99.0 Weakly correlated
21 ZNF705B 93 28.9 Weakly correlated
22 ZKSCAN1 92 160.0 Weakly correlated
23 ZNF554 91 99.0 Weakly correlated
24 ZKSCAN8 85 160.0 Weakly correlated
25 ZNF101 85 43.0 Weakly correlated
26 ZNF805 81 99.0 Weakly correlated
27 ZNF197 79 99.0 Weakly correlated
28 ZFP57 71 87.0 Moderately correlated
29 ZNF18 71 160.0 Weakly correlated
30 ZNF28 61 28.9 Weakly correlated
31 ZNF723 56 15.2 Weakly correlated
32 ZNF573 55 94.0 Highly correlated
33 ZNF610 55 28.9 Weakly correlated
34 ZNF506 50 28.9 Weakly correlated
35 ZNF705D 49 28.9 Weakly correlated
36 ZNF485 48 94.0 Highly correlated
37 ZNF707 43 74.0 Weakly correlated
38 ZNF674 40 99.0 Weakly correlated
39 ZNF701 39 28.9 Weakly correlated
40 ZNF320 38 28.9 Weakly correlated
41 ZNF274 36 99.0 Weakly correlated
42 ZNF490 34 43.0 Weakly correlated
43 ZNF75D 32 94.0 Highly correlated
44 ZNF92 32 28.9 Weakly correlated
45 ZNF528 27 43.0 Weakly correlated
46 ZNF251 26 94.0 Highly correlated
47 ZNF597 26 94.0 Highly correlated
48 ZNF140 23 99.0 Weakly correlated
49 ZNF141 23 43.0 Weakly correlated
50 ZNF486 23 8.6 Weakly correlated
51 ZNF133 21 99.0 Weakly correlated
52 ZNF519 19 19.6 Weakly correlated
53 ZNF735 19 28.9 Weakly correlated
54 ZNF91 19 6.0 Weakly correlated
55 ZNF331 18 94.0 Highly correlated
56 ZNF418 17 43.0 Weakly correlated
57 ZNF8 17 99.0 Weakly correlated
58 ZNF549 16 87.0 Moderately correlated
59 ZNF682 15 28.9 Weakly correlated
60 ZNF273 14 28.9 Weakly correlated
61 ZFP69 12 99.0 Weakly correlated
62 ZNF425 12 94.0 Highly correlated
63 ZNF792 12 94.0 Highly correlated
64 ZNF823 12 43.0 Weakly correlated
65 ZNF264 11 99.0 Weakly correlated
66 ZNF33A 11 99.0 Weakly correlated
67 ZNF441 10 43.0 Weakly correlated
68 ZNF548 10 94.0 Highly correlated
69 ZNF12 9 99.0 Weakly correlated
70 ZNF157 9 99.0 Weakly correlated
71 ZNF547 9 74.0 Weakly correlated
72 ZNF563 9 28.9 Weakly correlated
73 ZNF695 9 28.9 Weakly correlated
74 ZNF282 8 319.0 Weakly correlated
75 ZNF468 8 28.9 Weakly correlated
76 ZNF471 8 94.0 Highly correlated
77 ZNF816 8 28.9 Weakly correlated
78 ZKSCAN5 7 160.0 Weakly correlated
79 ZNF248 7 99.0 Weakly correlated
80 ZNF30 7 94.0 Highly correlated
81 ZNF334 7 99.0 Weakly correlated
82 ZNF41 7 99.0 Weakly correlated
83 ZNF677 7 99.0 Weakly correlated
84 ZNF780A 7 43.0 Weakly correlated
85 ZFP28 6 99.0 Weakly correlated
86 ZNF284 6 43.0 Weakly correlated
87 ZNF433 6 43.0 Weakly correlated
88 ZNF585A 6 99.0 Weakly correlated
89 ZNF675 6 8.6 Weakly correlated
90 ZNF845 6 28.9 Weakly correlated
91 ZNF84 6 99.0 Weakly correlated
92 ZNF182 5 99.0 Weakly correlated
93 ZNF287 5 99.0 Weakly correlated
94 ZNF431 5 28.9 Weakly correlated
95 ZNF436 5 180.0 Weakly correlated
96 ZNF10 4 99.0 Weakly correlated
97 ZNF169 4 94.0 Highly correlated
98 ZNF189 4 99.0 Weakly correlated
99 ZNF350 4 99.0 Weakly correlated
100 ZNF429 4 28.9 Weakly correlated
101 ZNF585B 4 99.0 Weakly correlated
102 ZNF611 4 19.6 Weakly correlated
103 ZNF778 4 74.0 Weakly correlated
104 ZNF808 4 19.6 Weakly correlated
105 ZNF93 4 8.6 Weakly correlated
106 ZNF100 3 28.9 Weakly correlated
107 ZNF136 3 74.0 Weakly correlated
108 ZNF17 3 69.0 Weakly correlated
109 ZNF184 3 99.0 Weakly correlated
110 ZNF26 3 99.0 Weakly correlated
111 ZNF343 3 74.0 Weakly correlated
112 ZNF347 3 43.0 Weakly correlated
113 ZNF440 3 28.9 Weakly correlated
114 ZNF445 3 99.0 Weakly correlated
115 ZNF483 3 99.0 Weakly correlated
116 ZNF566 3 99.0 Weakly correlated
117 ZNF641 3 99.0 Weakly correlated
118 ZNF681 3 28.9 Weakly correlated
119 ZNF730 3 19.6 Weakly correlated
120 ZNF75A 3 94.0 Highly correlated
121 ZNF765 3 8.6 Weakly correlated
122 ZNF786 3 99.0 Weakly correlated
123 ZNF789 3 99.0 Weakly correlated
124 ZNF114 2 28.9 Weakly correlated
125 ZNF202 2 160.0 Weakly correlated
126 ZNF283 2 99.0 Weakly correlated
127 ZNF337 2 43.0 Weakly correlated
128 ZNF33B 2 99.0 Weakly correlated
129 ZNF37A 2 99.0 Weakly correlated
130 ZNF44 2 43.0 Weakly correlated
131 ZNF530 2 28.9 Weakly correlated
132 ZNF543 2 99.0 Weakly correlated
133 ZNF544 2 0.0 Weakly correlated
134 ZNF559 2 74.0 Weakly correlated
135 ZNF565 2 99.0 Weakly correlated
136 ZNF567 2 99.0 Weakly correlated
137 ZNF649 2 28.9 Weakly correlated
138 ZNF658 2 99.0 Weakly correlated
139 ZNF667 2 99.0 Weakly correlated
140 ZNF671 2 94.0 Highly correlated
141 ZNF727 2 19.6 Weakly correlated
142 ZNF81 2 99.0 Weakly correlated
143 ZNF878 2 43.0 Weakly correlated
144 ZNF891 2 99.0 Weakly correlated
145 ZFP14 1 99.0 Weakly correlated
146 ZNF135 1 94.0 Highly correlated
147 ZNF180 1 99.0 Weakly correlated
148 ZNF214 1 99.0 Weakly correlated
149 ZNF224 1 69.0 Weakly correlated
150 ZNF230 1 28.9 Weakly correlated
151 ZNF250 1 99.0 Weakly correlated
152 ZNF304 1 99.0 Weakly correlated
153 ZNF354C 1 99.0 Weakly correlated
154 ZNF417 1 28.9 Weakly correlated
155 ZNF432 1 99.0 Weakly correlated
156 ZNF470 1 99.0 Weakly correlated
157 ZNF480 1 43.0 Weakly correlated
158 ZNF484 1 99.0 Weakly correlated
159 ZNF561 1 43.0 Weakly correlated
160 ZNF564 1 74.0 Weakly correlated
161 ZNF578 1 15.2 Weakly correlated
162 ZNF586 1 43.0 Weakly correlated
163 ZNF595 1 43.0 Weakly correlated
164 ZNF607 1 43.0 Weakly correlated
165 ZNF613 1 99.0 Weakly correlated
166 ZNF614 1 99.0 Weakly correlated
167 ZNF624 1 99.0 Weakly correlated
168 ZNF626 1 0.0 Weakly correlated
169 ZNF627 1 74.0 Weakly correlated
170 ZNF700 1 28.9 Weakly correlated
171 ZNF716 1 19.6 Weakly correlated
172 ZNF736 1 43.0 Weakly correlated
173 ZNF777 1 319.0 Weakly correlated
174 ZNF799 1 43.0 Weakly correlated
175 ZNF813 1 28.9 Weakly correlated
176 ZNF85 1 28.9 Weakly correlated
177 ZNF879 1 99.0 Weakly correlated
178 ZNF880 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 156 180.0 Weakly correlated
2 ZNF793 129 99.0 Weakly correlated
3 ZIM3 121 87.0 Moderately correlated
4 ZNF534 80 19.6 Weakly correlated
5 ZNF805 79 99.0 Weakly correlated
6 ZNF257 77 0.0 Weakly correlated
7 ZFP69B 69 99.0 Weakly correlated
8 ZNF479 56 6.4 Weakly correlated
9 ZNF382 54 99.0 Weakly correlated
10 ZNF573 49 94.0 Highly correlated
11 ZNF506 39 28.9 Weakly correlated
12 ZNF680 36 28.9 Weakly correlated
13 ZNF679 33 28.9 Weakly correlated
14 ZNF485 31 94.0 Highly correlated
15 ZNF558 25 99.0 Weakly correlated
16 ZNF723 21 15.2 Weakly correlated
17 ZNF766 17 43.0 Weakly correlated
18 ZFP57 15 87.0 Moderately correlated
19 ZNF141 14 43.0 Weakly correlated
20 ZNF589 14 28.9 Weakly correlated
21 ZNF175 14 94.0 Highly correlated
22 ZNF317 12 99.0 Weakly correlated
23 ZNF735 12 28.9 Weakly correlated
24 ZFP37 11 99.0 Weakly correlated
25 ZNF674 11 99.0 Weakly correlated
26 ZNF707 11 74.0 Weakly correlated
27 ZNF549 10 87.0 Moderately correlated
28 ZNF2 10 99.0 Weakly correlated
29 ZFP69 9 99.0 Weakly correlated
30 ZNF75D 9 94.0 Highly correlated
31 ZNF197 9 99.0 Weakly correlated
32 ZNF584 9 99.0 Weakly correlated
33 ZNF133 8 99.0 Weakly correlated
34 ZNF610 8 28.9 Weakly correlated
35 ZNF18 8 160.0 Weakly correlated
36 ZNF12 7 99.0 Weakly correlated
37 ZNF528 7 43.0 Weakly correlated
38 ZNF101 6 43.0 Weakly correlated
39 ZNF554 6 99.0 Weakly correlated
40 ZNF701 6 28.9 Weakly correlated
41 ZNF816 5 28.9 Weakly correlated
42 ZNF471 5 94.0 Highly correlated
43 ZNF320 4 28.9 Weakly correlated
44 ZNF33A 4 99.0 Weakly correlated
45 ZNF597 4 94.0 Highly correlated
46 ZNF705B 4 28.9 Weakly correlated
47 ZNF287 4 99.0 Weakly correlated
48 ZKSCAN1 3 160.0 Weakly correlated
49 ZNF10 3 99.0 Weakly correlated
50 ZNF140 3 99.0 Weakly correlated
51 ZNF705D 3 28.9 Weakly correlated
52 ZNF585A 3 99.0 Weakly correlated
53 ZNF28 3 28.9 Weakly correlated
54 ZNF490 3 43.0 Weakly correlated
55 ZNF823 3 43.0 Weakly correlated
56 ZNF695 3 28.9 Weakly correlated
57 ZNF273 3 28.9 Weakly correlated
58 ZKSCAN5 2 160.0 Weakly correlated
59 ZNF100 2 28.9 Weakly correlated
60 ZNF331 2 94.0 Highly correlated
61 ZNF75A 2 94.0 Highly correlated
62 ZNF780A 2 43.0 Weakly correlated
63 ZNF283 2 99.0 Weakly correlated
64 ZNF84 2 99.0 Weakly correlated
65 ZNF324 2 99.0 Weakly correlated
66 ZNF440 2 28.9 Weakly correlated
67 ZNF189 2 99.0 Weakly correlated
68 ZNF530 2 28.9 Weakly correlated
69 ZNF282 2 319.0 Weakly correlated
70 ZNF566 2 99.0 Weakly correlated
71 ZNF675 2 8.6 Weakly correlated
72 ZNF677 2 99.0 Weakly correlated
73 ZFP14 1 99.0 Weakly correlated
74 ZFP28 1 99.0 Weakly correlated
75 ZNF157 1 99.0 Weakly correlated
76 ZNF251 1 94.0 Highly correlated
77 ZNF30 1 94.0 Highly correlated
78 ZNF641 1 99.0 Weakly correlated
79 ZNF736 1 43.0 Weakly correlated
80 ZNF91 1 6.0 Weakly correlated
81 ZNF224 1 69.0 Weakly correlated
82 ZNF274 1 99.0 Weakly correlated
83 ZNF347 1 43.0 Weakly correlated
84 ZNF433 1 43.0 Weakly correlated
85 ZNF417 1 28.9 Weakly correlated
86 ZNF484 1 99.0 Weakly correlated
87 ZNF563 1 28.9 Weakly correlated
88 ZNF565 1 99.0 Weakly correlated
89 ZNF671 1 94.0 Highly correlated
90 ZNF169 1 94.0 Highly correlated
91 ZNF17 1 69.0 Weakly correlated
92 ZNF483 1 99.0 Weakly correlated
93 ZNF586 1 43.0 Weakly correlated
94 ZNF792 1 94.0 Highly correlated
95 ZNF92 1 28.9 Weakly correlated
96 ZKSCAN8 1 160.0 Weakly correlated
97 ZNF789 1 99.0 Weakly correlated
98 ZNF304 1 99.0 Weakly correlated
99 ZNF350 1 99.0 Weakly correlated
100 ZNF681 1 28.9 Weakly correlated
101 ZNF264 1 99.0 Weakly correlated
102 ZNF468 1 28.9 Weakly correlated
103 ZNF519 1 19.6 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZFP57 87.0 Moderately correlated
3 ZFP69B 99.0 Weakly correlated
4 ZFP69 99.0 Weakly correlated
5 ZIM3 87.0 Moderately correlated
6 ZNF175 94.0 Highly correlated
7 ZNF197 99.0 Weakly correlated
8 ZNF257 0.0 Weakly correlated
9 ZNF263 180.0 Weakly correlated
10 ZNF317 99.0 Weakly correlated
11 ZNF534 19.6 Weakly correlated
12 ZNF554 99.0 Weakly correlated
13 ZNF584 99.0 Weakly correlated
14 ZNF589 28.9 Weakly correlated
15 ZNF793 99.0 Weakly correlated