ZRdb KZFP & Repeats
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LTR_MLT1B

  • Name
    MLT1B
  • Repbase
    MLT1B
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001127
Description :

MLT1B (Mammalian LTR Transposon) has 5 bp TSDs. Note that a full-lengthERV-MaLR (Mammalian apparent LTR retrotransposon) element is derivedfrom an ERV (Endogenous Retrovirus), but only contains the Gag gene(that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttatgggctgaattgtgtccccccaaaattcatatgttgaagtcctaacccccagtacctcagaatgtgactgtatttggagatagggcctttaaagaggtaattaagttaaaatgaggtcattagggtgggccctaatccaatatgactggtgtccttataagaagaggagattaggacacagacacgcacagagggaagaccatgtgaggacacagggagaaggcggccatctgcaagccaaggagagaggcctcagaagaaaccaaccctgccgacaccttgatctcggacttccagcctccagaactgtgagaaaataaatttctgttgtttaagccacccagtctgtggtactttgttatggcagccctagcaaactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 1049 99.0 Highly correlated
2 ZNF766 398 43.0 Weakly correlated
3 ZNF263 217 180.0 Weakly correlated
4 ZNF394 190 99.0 Highly correlated
5 ZNF705B 165 28.9 Weakly correlated
6 ZIM3 149 87.0 Moderately correlated
7 ZNF175 146 94.0 Moderately correlated
8 ZFP69B 141 99.0 Highly correlated
9 ZNF679 134 28.9 Weakly correlated
10 ZNF589 133 28.9 Weakly correlated
11 ZFP37 123 99.0 Highly correlated
12 ZKSCAN1 110 160.0 Weakly correlated
13 ZNF705D 106 28.9 Weakly correlated
14 ZKSCAN8 103 160.0 Weakly correlated
15 ZNF584 94 99.0 Highly correlated
16 ZNF2 93 99.0 Highly correlated
17 ZNF264 91 99.0 Highly correlated
18 ZNF680 82 28.9 Weakly correlated
19 ZNF197 80 99.0 Highly correlated
20 ZNF18 77 160.0 Weakly correlated
21 ZNF558 76 99.0 Highly correlated
22 ZNF479 75 6.4 Weakly correlated
23 ZNF257 73 0.0 Weakly correlated
24 ZNF317 72 99.0 Highly correlated
25 ZNF534 72 19.6 Weakly correlated
26 ZNF101 71 43.0 Weakly correlated
27 ZNF548 71 94.0 Moderately correlated
28 ZNF324 70 99.0 Highly correlated
29 ZNF793 67 99.0 Highly correlated
30 ZNF554 50 99.0 Highly correlated
31 ZNF610 42 28.9 Weakly correlated
32 ZNF707 41 74.0 Weakly correlated
33 ZNF251 37 94.0 Moderately correlated
34 ZNF320 37 28.9 Weakly correlated
35 ZNF723 33 15.2 Weakly correlated
36 ZNF157 31 99.0 Highly correlated
37 ZNF169 31 94.0 Moderately correlated
38 ZNF519 30 19.6 Weakly correlated
39 ZNF274 28 99.0 Highly correlated
40 ZNF485 28 94.0 Moderately correlated
41 ZNF528 27 43.0 Weakly correlated
42 ZFP57 26 87.0 Moderately correlated
43 ZNF140 25 99.0 Highly correlated
44 ZNF547 23 74.0 Weakly correlated
45 ZNF778 22 74.0 Weakly correlated
46 ZNF506 21 28.9 Weakly correlated
47 ZNF597 20 94.0 Moderately correlated
48 ZNF92 20 28.9 Weakly correlated
49 ZNF12 19 99.0 Highly correlated
50 ZNF28 19 28.9 Weakly correlated
51 ZNF682 19 28.9 Weakly correlated
52 ZNF701 18 28.9 Weakly correlated
53 ZNF331 17 94.0 Moderately correlated
54 ZNF490 17 43.0 Weakly correlated
55 ZNF585B 17 99.0 Highly correlated
56 ZNF735 17 28.9 Weakly correlated
57 ZNF792 17 94.0 Moderately correlated
58 ZNF486 15 8.6 Weakly correlated
59 ZNF695 15 28.9 Weakly correlated
60 ZNF133 14 99.0 Highly correlated
61 ZNF549 14 87.0 Moderately correlated
62 ZNF202 11 160.0 Weakly correlated
63 ZNF641 11 99.0 Highly correlated
64 ZNF75D 11 94.0 Moderately correlated
65 ZNF141 10 43.0 Weakly correlated
66 ZNF468 10 28.9 Weakly correlated
67 ZNF425 9 94.0 Moderately correlated
68 ZNF563 9 28.9 Weakly correlated
69 ZNF282 8 319.0 Weakly correlated
70 ZNF284 8 43.0 Weakly correlated
71 ZNF823 8 43.0 Weakly correlated
72 ZNF8 8 99.0 Highly correlated
73 ZNF10 7 99.0 Highly correlated
74 ZNF334 7 99.0 Highly correlated
75 ZNF786 7 99.0 Highly correlated
76 ZNF808 7 19.6 Weakly correlated
77 ZKSCAN5 6 160.0 Weakly correlated
78 ZNF273 6 28.9 Weakly correlated
79 ZNF41 6 99.0 Highly correlated
80 ZNF17 5 69.0 Weakly correlated
81 ZNF248 5 99.0 Highly correlated
82 ZNF33A 5 99.0 Highly correlated
83 ZNF350 5 99.0 Highly correlated
84 ZNF354C 5 99.0 Highly correlated
85 ZNF436 5 180.0 Weakly correlated
86 ZNF441 5 43.0 Weakly correlated
87 ZNF605 5 99.0 Highly correlated
88 ZNF671 5 94.0 Moderately correlated
89 ZNF730 5 19.6 Weakly correlated
90 ZNF780A 5 43.0 Weakly correlated
91 ZNF84 5 99.0 Highly correlated
92 ZNF91 5 6.0 Weakly correlated
93 ZNF100 4 28.9 Weakly correlated
94 ZNF333 4 99.0 Highly correlated
95 ZNF573 4 94.0 Moderately correlated
96 ZNF585A 4 99.0 Highly correlated
97 ZNF611 4 19.6 Weakly correlated
98 ZNF616 4 43.0 Weakly correlated
99 ZNF658 4 99.0 Highly correlated
100 ZFP69 3 99.0 Highly correlated
101 ZNF136 3 74.0 Weakly correlated
102 ZNF182 3 99.0 Highly correlated
103 ZNF19 3 99.0 Highly correlated
104 ZNF347 3 43.0 Weakly correlated
105 ZNF354A 3 99.0 Highly correlated
106 ZNF417 3 28.9 Weakly correlated
107 ZNF429 3 28.9 Weakly correlated
108 ZNF440 3 28.9 Weakly correlated
109 ZNF44 3 43.0 Weakly correlated
110 ZNF471 3 94.0 Moderately correlated
111 ZNF483 3 99.0 Highly correlated
112 ZNF484 3 99.0 Highly correlated
113 ZNF564 3 74.0 Weakly correlated
114 ZNF674 3 99.0 Highly correlated
115 ZNF727 3 19.6 Weakly correlated
116 ZNF799 3 43.0 Weakly correlated
117 ZNF93 3 8.6 Weakly correlated
118 ZFP28 2 99.0 Highly correlated
119 ZFP30 2 99.0 Highly correlated
120 ZNF160 2 74.0 Weakly correlated
121 ZNF250 2 99.0 Highly correlated
122 ZNF267 2 43.0 Weakly correlated
123 ZNF418 2 43.0 Weakly correlated
124 ZNF420 2 94.0 Moderately correlated
125 ZNF431 2 28.9 Weakly correlated
126 ZNF445 2 99.0 Highly correlated
127 ZNF480 2 43.0 Weakly correlated
128 ZNF510 2 99.0 Highly correlated
129 ZNF586 2 43.0 Weakly correlated
130 ZNF595 2 43.0 Weakly correlated
131 ZNF596 2 94.0 Moderately correlated
132 ZNF669 2 43.0 Weakly correlated
133 ZNF675 2 8.6 Weakly correlated
134 ZNF684 2 99.0 Highly correlated
135 ZNF81 2 99.0 Highly correlated
136 ZNF891 2 99.0 Highly correlated
137 ZFP82 1 99.0 Highly correlated
138 ZNF114 1 28.9 Weakly correlated
139 ZNF124 1 43.0 Weakly correlated
140 ZNF184 1 99.0 Highly correlated
141 ZNF189 1 99.0 Highly correlated
142 ZNF222 1 43.0 Weakly correlated
143 ZNF223 1 43.0 Weakly correlated
144 ZNF254 1 43.0 Weakly correlated
145 ZNF283 1 99.0 Highly correlated
146 ZNF304 1 99.0 Highly correlated
147 ZNF37A 1 99.0 Highly correlated
148 ZNF432 1 99.0 Highly correlated
149 ZNF433 1 43.0 Weakly correlated
150 ZNF43 1 43.0 Weakly correlated
151 ZNF461 1 99.0 Highly correlated
152 ZNF530 1 28.9 Weakly correlated
153 ZNF559 1 74.0 Weakly correlated
154 ZNF567 1 99.0 Highly correlated
155 ZNF583 1 99.0 Highly correlated
156 ZNF607 1 43.0 Weakly correlated
157 ZNF613 1 99.0 Highly correlated
158 ZNF700 1 28.9 Weakly correlated
159 ZNF716 1 19.6 Weakly correlated
160 ZNF736 1 43.0 Weakly correlated
161 ZNF747 1 43.0 Weakly correlated
162 ZNF749 1 28.9 Weakly correlated
163 ZNF75A 1 94.0 Moderately correlated
164 ZNF777 1 319.0 Weakly correlated
165 ZNF789 1 99.0 Highly correlated
166 ZNF791 1 87.0 Moderately correlated
167 ZNF805 1 99.0 Highly correlated
168 ZNF816 1 28.9 Weakly correlated
169 ZNF845 1 28.9 Weakly correlated
170 ZNF85 1 28.9 Weakly correlated
171 ZNF878 1 43.0 Weakly correlated
172 ZNF879 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 72 87.0 Moderately correlated
2 ZNF382 59 99.0 Highly correlated
3 ZNF479 36 6.4 Weakly correlated
4 ZNF534 36 19.6 Weakly correlated
5 ZNF263 34 180.0 Weakly correlated
6 ZFP69B 31 99.0 Highly correlated
7 ZNF257 30 0.0 Weakly correlated
8 ZNF705B 29 28.9 Weakly correlated
9 ZNF705D 27 28.9 Weakly correlated
10 ZNF766 20 43.0 Weakly correlated
11 ZNF101 19 43.0 Weakly correlated
12 ZNF12 17 99.0 Highly correlated
13 ZNF680 16 28.9 Weakly correlated
14 ZNF558 15 99.0 Highly correlated
15 ZNF589 13 28.9 Weakly correlated
16 ZNF679 13 28.9 Weakly correlated
17 ZNF317 13 99.0 Highly correlated
18 ZNF549 12 87.0 Moderately correlated
19 ZNF723 12 15.2 Weakly correlated
20 ZNF506 10 28.9 Weakly correlated
21 ZNF264 10 99.0 Highly correlated
22 ZNF197 10 99.0 Highly correlated
23 ZNF485 10 94.0 Moderately correlated
24 ZNF175 10 94.0 Moderately correlated
25 ZNF584 9 99.0 Highly correlated
26 ZNF141 8 43.0 Weakly correlated
27 ZNF793 8 99.0 Highly correlated
28 ZNF169 8 94.0 Moderately correlated
29 ZNF778 8 74.0 Weakly correlated
30 ZNF10 7 99.0 Highly correlated
31 ZNF735 7 28.9 Weakly correlated
32 ZNF140 6 99.0 Highly correlated
33 ZNF641 6 99.0 Highly correlated
34 ZNF490 6 43.0 Weakly correlated
35 ZNF519 6 19.6 Weakly correlated
36 ZFP57 5 87.0 Moderately correlated
37 ZKSCAN1 5 160.0 Weakly correlated
38 ZNF133 5 99.0 Highly correlated
39 ZNF2 5 99.0 Highly correlated
40 ZNF468 5 28.9 Weakly correlated
41 ZKSCAN5 4 160.0 Weakly correlated
42 ZKSCAN8 4 160.0 Weakly correlated
43 ZNF554 4 99.0 Highly correlated
44 ZNF707 4 74.0 Weakly correlated
45 ZNF320 4 28.9 Weakly correlated
46 ZNF682 4 28.9 Weakly correlated
47 ZNF695 4 28.9 Weakly correlated
48 ZNF547 4 74.0 Weakly correlated
49 ZNF75D 4 94.0 Moderately correlated
50 ZFP37 3 99.0 Highly correlated
51 ZNF333 3 99.0 Highly correlated
52 ZNF528 3 43.0 Weakly correlated
53 ZNF564 3 74.0 Weakly correlated
54 ZNF597 3 94.0 Moderately correlated
55 ZNF823 3 43.0 Weakly correlated
56 ZNF354C 3 99.0 Highly correlated
57 ZNF202 3 160.0 Weakly correlated
58 ZNF251 3 94.0 Moderately correlated
59 ZNF417 3 28.9 Weakly correlated
60 ZNF28 3 28.9 Weakly correlated
61 ZNF792 3 94.0 Moderately correlated
62 ZNF157 2 99.0 Highly correlated
63 ZNF324 2 99.0 Highly correlated
64 ZNF331 2 94.0 Moderately correlated
65 ZNF610 2 28.9 Weakly correlated
66 ZNF675 2 8.6 Weakly correlated
67 ZNF596 2 94.0 Moderately correlated
68 ZNF347 2 43.0 Weakly correlated
69 ZNF585B 2 99.0 Highly correlated
70 ZNF671 2 94.0 Moderately correlated
71 ZNF18 2 160.0 Weakly correlated
72 ZNF350 2 99.0 Highly correlated
73 ZNF780A 2 43.0 Weakly correlated
74 ZNF84 2 99.0 Highly correlated
75 ZNF701 2 28.9 Weakly correlated
76 ZFP69 1 99.0 Highly correlated
77 ZNF100 1 28.9 Weakly correlated
78 ZNF429 1 28.9 Weakly correlated
79 ZNF433 1 43.0 Weakly correlated
80 ZNF585A 1 99.0 Highly correlated
81 ZNF586 1 43.0 Weakly correlated
82 ZNF85 1 28.9 Weakly correlated
83 ZNF92 1 28.9 Weakly correlated
84 ZNF548 1 94.0 Moderately correlated
85 ZNF254 1 43.0 Weakly correlated
86 ZFP28 1 99.0 Highly correlated
87 ZNF267 1 43.0 Weakly correlated
88 ZNF273 1 28.9 Weakly correlated
89 ZNF334 1 99.0 Highly correlated
90 ZNF394 1 99.0 Highly correlated
91 ZNF41 1 99.0 Highly correlated
92 ZNF44 1 43.0 Weakly correlated
93 ZNF805 1 99.0 Highly correlated
94 ZNF486 1 8.6 Weakly correlated
95 ZNF567 1 99.0 Highly correlated
96 ZNF605 1 99.0 Highly correlated
97 ZNF573 1 94.0 Moderately correlated
98 ZNF274 1 99.0 Highly correlated
99 ZNF480 1 43.0 Weakly correlated
100 ZNF484 1 99.0 Highly correlated
101 ZNF674 1 99.0 Highly correlated
102 ZNF716 1 19.6 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP69B 99.0 Highly correlated
2 ZIM3 87.0 Moderately correlated
3 ZNF175 94.0 Moderately correlated
4 ZNF197 99.0 Highly correlated
5 ZNF257 0.0 Weakly correlated
6 ZNF263 180.0 Weakly correlated
7 ZNF519 19.6 Weakly correlated
8 ZNF584 99.0 Highly correlated
9 ZNF589 28.9 Weakly correlated