ZRdb KZFP & Repeats
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LTR_MLT1A1

  • Name
    MLT1A1
  • Repbase
    MLT1A1
  • Type
    LTR
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0001002
Description :

MLTA1 (Mammalian LTR Transposon) represents a more substantial MLT1Avariant. Note that a full-length ERV-MaLR (Mammalian apparent LTRretrotransposon) element is derived from an ERV (Endogenous Retrovirus),but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgctatggtttgaatgtttgtgtcccctccaaaattcatgtgttgaaacttaatccccaatgcgatagtattaagaggtggggcctttaggaggtgattaggtcatgagggctccgccctcatgaatgggattagtgcccttataaaaggggcttgagggagcgagttcggcccttcttgcccttccgctcttccgccatgtgaggacacagcgttcctcccctccggaggatgcagcaacaaggcgccatcttggaagcagagagcaggccctcaccagacaccgaacctgccggcgccttgatcttggacttcccagcctccagaactgtgagaaataaatttctgttctttataaattacccagtctcaggtattttgttatagcagcacaaacggactaagaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF547 72 74.0 Moderately correlated
2 ZNF707 35 74.0 Moderately correlated
3 ZNF680 20 28.9 Weakly correlated
4 ZNF382 17 99.0 Weakly correlated
5 ZNF479 8 6.4 Weakly correlated
6 ZNF766 7 43.0 Weakly correlated
7 ZNF263 7 180.0 Weakly correlated
8 ZNF251 4 94.0 Weakly correlated
9 ZFP37 3 99.0 Weakly correlated
10 ZKSCAN1 3 160.0 Weakly correlated
11 ZKSCAN8 3 160.0 Weakly correlated
12 ZNF534 2 19.6 Weakly correlated
13 ZNF320 2 28.9 Weakly correlated
14 ZNF317 2 99.0 Weakly correlated
15 ZNF274 2 99.0 Weakly correlated
16 ZNF264 2 99.0 Weakly correlated
17 ZNF682 2 28.9 Weakly correlated
18 ZNF701 2 28.9 Weakly correlated
19 ZNF18 2 160.0 Weakly correlated
20 ZNF75D 2 94.0 Weakly correlated
21 ZNF793 2 99.0 Weakly correlated
22 ZIM3 2 87.0 Highly correlated
23 ZNF730 1 19.6 Weakly correlated
24 ZNF679 1 28.9 Weakly correlated
25 ZNF780A 1 43.0 Weakly correlated
26 ZNF671 1 94.0 Weakly correlated
27 ZNF605 1 99.0 Weakly correlated
28 ZNF808 1 19.6 Weakly correlated
29 ZNF584 1 99.0 Weakly correlated
30 ZNF554 1 99.0 Weakly correlated
31 ZNF92 1 28.9 Weakly correlated
32 ZNF248 1 99.0 Weakly correlated
33 ZFP57 1 87.0 Highly correlated
34 ZNF114 1 28.9 Weakly correlated
35 ZNF12 1 99.0 Weakly correlated
36 ZNF136 1 74.0 Moderately correlated
37 ZNF140 1 99.0 Weakly correlated
38 ZNF175 1 94.0 Weakly correlated
39 ZNF197 1 99.0 Weakly correlated
40 ZNF230 1 28.9 Weakly correlated
41 ZNF506 1 28.9 Weakly correlated
42 ZNF257 1 0.0 Weakly correlated
43 ZNF273 1 28.9 Weakly correlated
44 ZNF28 1 28.9 Weakly correlated
45 ZNF324 1 99.0 Weakly correlated
46 ZNF394 1 99.0 Weakly correlated
47 ZNF485 1 94.0 Weakly correlated
48 ZNF490 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF707 17 74.0 Moderately correlated
2 ZNF680 10 28.9 Weakly correlated
3 ZNF479 6 6.4 Weakly correlated
4 ZNF534 2 19.6 Weakly correlated
5 ZNF766 2 43.0 Weakly correlated
6 ZNF263 2 180.0 Weakly correlated
7 ZIM3 2 87.0 Highly correlated
8 ZNF701 1 28.9 Weakly correlated
9 ZNF317 1 99.0 Weakly correlated
10 ZNF264 1 99.0 Weakly correlated
11 ZNF320 1 28.9 Weakly correlated
12 ZNF257 1 0.0 Weakly correlated
13 ZNF251 1 94.0 Weakly correlated
14 ZNF793 1 99.0 Weakly correlated
15 ZNF382 1 99.0 Weakly correlated
16 ZNF75D 1 94.0 Weakly correlated
17 ZNF554 1 99.0 Weakly correlated
18 ZNF506 1 28.9 Weakly correlated
19 ZNF12 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats