ZRdb KZFP & Repeats
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LTR_MLT1A0

  • Name
    MLT1A0
  • Repbase
    MLT1A0
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001001
Description :

MLT1A0 (Mammalian LTR Transposon) has 5 bp TSDs. This represents a minorvariant of MLT1A, differing primarily by an 11bp indel. Note that afull-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element isderived from an ERV (Endogenous Retrovirus), but only contains the Gaggene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgctatggtctgaatgtttgtgtccccccaaaattcatatgttgaaacctaacccccaangtgatggtattaggaggtggggcctttgggaggtgattaggtcatgagggcggagccctcatgaatgggattagtgcccttataaaagaggccccagagagctccctcgccccttccgccatgtgaggacacagcgagaaggcgccgtctatgaaccaggaagcgggccctcaccagacaccgaatctgccggcgccttgatcttggacttcccagcctccagaactgtgagaaataaatttctgttgtttataagccacccagtctatggtattttgttatagcagcccgaacggactaagaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF707 49 74.0 Weakly correlated
2 ZNF680 27 28.9 Weakly correlated
3 ZNF547 18 74.0 Weakly correlated
4 ZNF793 12 99.0 Highly correlated
5 ZNF382 12 99.0 Highly correlated
6 ZIM3 11 87.0 Moderately correlated
7 ZNF479 8 6.4 Weakly correlated
8 ZNF766 8 43.0 Weakly correlated
9 ZNF584 7 99.0 Highly correlated
10 ZNF534 7 19.6 Weakly correlated
11 ZNF679 7 28.9 Weakly correlated
12 ZNF263 7 180.0 Weakly correlated
13 ZNF705B 5 28.9 Weakly correlated
14 ZNF554 5 99.0 Highly correlated
15 ZNF274 4 99.0 Highly correlated
16 ZNF723 4 15.2 Weakly correlated
17 ZNF701 4 28.9 Weakly correlated
18 ZNF320 3 28.9 Weakly correlated
19 ZNF506 3 28.9 Weakly correlated
20 ZNF823 3 43.0 Weakly correlated
21 ZKSCAN8 3 160.0 Weakly correlated
22 ZKSCAN1 3 160.0 Weakly correlated
23 ZNF141 3 43.0 Weakly correlated
24 ZNF175 3 94.0 Moderately correlated
25 ZNF589 3 28.9 Weakly correlated
26 ZNF705D 3 28.9 Weakly correlated
27 ZNF735 3 28.9 Weakly correlated
28 ZFP28 2 99.0 Highly correlated
29 ZNF597 2 94.0 Moderately correlated
30 ZNF585B 2 99.0 Highly correlated
31 ZNF75D 2 94.0 Moderately correlated
32 ZNF490 2 43.0 Weakly correlated
33 ZNF483 2 99.0 Highly correlated
34 ZNF140 2 99.0 Highly correlated
35 ZNF682 2 28.9 Weakly correlated
36 ZNF2 2 99.0 Highly correlated
37 ZNF18 2 160.0 Weakly correlated
38 ZNF611 1 19.6 Weakly correlated
39 ZNF605 1 99.0 Highly correlated
40 ZNF677 1 99.0 Highly correlated
41 ZNF845 1 28.9 Weakly correlated
42 ZNF84 1 99.0 Highly correlated
43 ZNF317 1 99.0 Highly correlated
44 ZFP37 1 99.0 Highly correlated
45 ZFP57 1 87.0 Moderately correlated
46 ZNF101 1 43.0 Weakly correlated
47 ZNF10 1 99.0 Highly correlated
48 ZNF114 1 28.9 Weakly correlated
49 ZNF257 1 0.0 Weakly correlated
50 ZNF264 1 99.0 Highly correlated
51 ZNF287 1 99.0 Highly correlated
52 ZNF28 1 28.9 Weakly correlated
53 ZNF302 1 43.0 Weakly correlated
54 ZNF577 1 94.0 Moderately correlated
55 ZNF394 1 99.0 Highly correlated
56 ZNF417 1 28.9 Weakly correlated
57 ZNF425 1 94.0 Moderately correlated
58 ZNF440 1 28.9 Weakly correlated
59 ZNF441 1 43.0 Weakly correlated
60 ZNF510 1 99.0 Highly correlated
61 ZNF519 1 19.6 Weakly correlated
62 ZNF558 1 99.0 Highly correlated
63 ZNF560 1 43.0 Weakly correlated
64 ZNF563 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF707 18 74.0 Weakly correlated
2 ZNF680 11 28.9 Weakly correlated
3 ZNF479 7 6.4 Weakly correlated
4 ZIM3 6 87.0 Moderately correlated
5 ZNF534 6 19.6 Weakly correlated
6 ZNF793 5 99.0 Highly correlated
7 ZNF705B 4 28.9 Weakly correlated
8 ZNF263 3 180.0 Weakly correlated
9 ZNF705D 2 28.9 Weakly correlated
10 ZNF141 2 43.0 Weakly correlated
11 ZNF723 2 15.2 Weakly correlated
12 ZNF483 1 99.0 Highly correlated
13 ZNF382 1 99.0 Highly correlated
14 ZNF18 1 160.0 Weakly correlated
15 ZNF677 1 99.0 Highly correlated
16 ZNF320 1 28.9 Weakly correlated
17 ZNF302 1 43.0 Weakly correlated
18 ZNF75D 1 94.0 Moderately correlated
19 ZNF701 1 28.9 Weakly correlated
20 ZNF766 1 43.0 Weakly correlated
21 ZNF554 1 99.0 Highly correlated
22 ZNF440 1 28.9 Weakly correlated
23 ZNF506 1 28.9 Weakly correlated
24 ZNF585B 1 99.0 Highly correlated
25 ZKSCAN8 1 160.0 Weakly correlated
26 ZNF140 1 99.0 Highly correlated
27 ZNF101 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats