ZRdb KZFP & Repeats
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LTR_MLT1A

  • Name
    MLT1A
  • Repbase
    MLT1A0
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001126
Description :

MLT1A (Mammalian LTR Transposon) has 5 bp TSDs. This is an intermediatesubfamily between MSTD and MLT1C. Note that a full-length ERV-MaLR(Mammalian apparent LTR retrotransposon) element is derived from an ERV(Endogenous Retrovirus), but only contains the Gag gene (that is, no Polor Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgctatggactgaatgtttgtgtccccccaaaattcatatgttgaagccctaacccccaatgtgatggtatttggaggtggggcctttgggaggtaattaggnttagatgaggtcatgagggtggggccctcatgatgggattagtgcccttataaaagagacaccagagagctctcttnccccttccgccatgtgaggacacagcgagaaggcgccgtctgcaagccaggaagagagccctcaccagaaaccgaatctgccggcaccttgatcttggacttcccagcctccagaactgtgagaaataaatttctgttgtttaagccacccagtctatggtattttgttatggcagcccgagcngactaagaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 9 99.0 Highly correlated
2 ZNF707 6 74.0 Weakly correlated
3 ZNF766 5 43.0 Weakly correlated
4 ZNF534 5 19.6 Weakly correlated
5 ZIM3 4 87.0 Moderately correlated
6 ZNF680 4 28.9 Weakly correlated
7 ZNF483 4 99.0 Highly correlated
8 ZNF584 3 99.0 Highly correlated
9 ZNF554 3 99.0 Highly correlated
10 ZNF317 3 99.0 Highly correlated
11 ZNF679 3 28.9 Weakly correlated
12 ZNF394 3 99.0 Highly correlated
13 ZNF2 2 99.0 Highly correlated
14 ZNF616 2 43.0 Weakly correlated
15 ZNF257 2 0.0 Weakly correlated
16 ZNF479 2 6.4 Weakly correlated
17 ZNF114 1 28.9 Weakly correlated
18 ZNF140 1 99.0 Highly correlated
19 ZNF701 1 28.9 Weakly correlated
20 ZNF705B 1 28.9 Weakly correlated
21 ZNF528 1 43.0 Weakly correlated
22 ZNF723 1 15.2 Weakly correlated
23 ZFP37 1 99.0 Highly correlated
24 ZNF777 1 319.0 Weakly correlated
25 ZNF792 1 94.0 Moderately correlated
26 ZNF573 1 94.0 Moderately correlated
27 ZNF141 1 43.0 Weakly correlated
28 ZNF263 1 180.0 Weakly correlated
29 ZNF506 1 28.9 Weakly correlated
30 ZNF485 1 94.0 Moderately correlated
31 ZNF197 1 99.0 Highly correlated
32 ZNF429 1 28.9 Weakly correlated
33 ZNF347 1 43.0 Weakly correlated
34 ZNF324 1 99.0 Highly correlated
35 ZNF274 1 99.0 Highly correlated
36 ZNF264 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF707 4 74.0 Weakly correlated
2 ZNF680 2 28.9 Weakly correlated
3 ZNF534 2 19.6 Weakly correlated
4 ZNF141 1 43.0 Weakly correlated
5 ZNF479 1 6.4 Weakly correlated
6 ZNF197 1 99.0 Highly correlated
7 ZNF792 1 94.0 Moderately correlated
8 ZNF528 1 43.0 Weakly correlated
9 ZNF506 1 28.9 Weakly correlated
10 ZNF382 1 99.0 Highly correlated
11 ZFP37 1 99.0 Highly correlated
12 ZNF483 1 99.0 Highly correlated
13 ZNF263 1 180.0 Weakly correlated
14 ZNF2 1 99.0 Highly correlated
15 ZNF264 1 99.0 Highly correlated
16 ZNF140 1 99.0 Highly correlated
17 ZIM3 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats