ZRdb KZFP & Repeats
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LTR_MLT-INT

  • Name
    MLT-INT
  • Repbase
    MLT-int
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001039
Description :

MLT-int (Mammalian LTR Transposon) is related to MST-int and THE1-int.Note that a full-length ERV-MaLR (Mammalian apparent LTRretrotransposon) element is derived from an ERV (Endogenous Retrovirus),but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gaaattggtaccgagagtgggggtgctgctataacaaatacctaaaaatgtggaagcggctttggaactgggtaatgggtagaggctggaagagtttngaggtgcatgctagaaaaagcctanattgccgtgaacggancgttaagggcgattctggtgagggctcagaagaagaggagagctgtagagaaagcctcaatcttcttagagattacctaagtggtcgtgancagaatgttggtagaaatatggacggtaaaggccattctgatgaggtctcagacggaaatgaggaacatgttattggaaactggaggaaaggccatccttgttataaagtggcaaagaacttggctgaattgtgtccgtgtcctagngctttgtggaaggcagaacttangagcgatgaantaggatatttggcggaagaaatntctaagcaaagtgttgagggtgcngcgtggcttctcttgactgcttatagtaaaatgcgagaagagagaaatganttaaagacggaatttataatcaaaagggaagcagaacntaaagatttggaaaattctcagcctggccatgttgnaaagaatgaaaaagcgtgttcgggagagaanaccaagggtgtggccaagcgaccgtttgataaggagattagtatggatagaaggaagccaggtgctattcatcaagacaatggaagaatgaccccgaaggcatttcggagatcttcgaggctgcccctcccatcacaggcccagagtgcnagggcctngagggcagaacggtttcaagggcaggnnccantccccactgcccagngccgcctcagtctgctccccgtcttcggccgcccgnncagctgtggctcaagcgggcccaggtgcggctcgggccgccgctccggaaggcacaagccgtaaaccttggcggcgtccacgtggtgctaactctgcaggcgcgcagagtgcangagctgtgggggcatggctncctccacctagatttcaaagatgcgagacctggggcccaggcagaganctcgcggggcagggccaccgcagagagcccccactagggcaatgcccagtggagccgtggggtcgggnctgcagagagcccccactagggcaatgcctagtggagccgtgggggcggggccgcccccgagaccccagaactgtagagccaccagcgtgcaacnccagcctgggagagccgcaggcacgngactccaacccgtgagagctgccgcgtgggctgcgcccagcaaagccatgggggcggggctgcccggggccttgggggcccaacccccgccccagtgtgtccggaaggcgggacatggagtcaaagaagattattctcgagccttaagatttaatgttgtttgccctgttgggttttggacttacttgggacctgttacccctttcttctttcctatttctcccttttggaatgggaatgtctatcctatgcctgtcccaccattgtattttggaagcacataacttgtttgatttcacaggctcacagctggagaggaattttgcctcaggatgaatcgtaccttgagtctcacccatatctgatttagatgatatttagatgagactttggactttagactttngagttgatgctggaacgagttaagactttnggggctattgggatggaatgaatgtattttgcatgtgagaaggacatgaattttggggggccaggggcggaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF547 14 74.0 Weakly correlated
2 ZNF793 6 99.0 Highly correlated
3 ZNF585B 6 99.0 Highly correlated
4 ZNF766 5 43.0 Weakly correlated
5 ZNF382 5 99.0 Highly correlated
6 ZNF479 3 6.4 Weakly correlated
7 ZNF506 2 28.9 Weakly correlated
8 ZNF679 2 28.9 Weakly correlated
9 ZNF675 2 8.6 Weakly correlated
10 ZNF586 2 43.0 Weakly correlated
11 ZFP37 2 99.0 Highly correlated
12 ZNF486 2 8.6 Weakly correlated
13 ZNF251 2 94.0 Moderately correlated
14 ZNF317 2 99.0 Highly correlated
15 ZNF585A 1 99.0 Highly correlated
16 ZNF135 1 94.0 Moderately correlated
17 ZNF141 1 43.0 Weakly correlated
18 ZNF746 1 99.0 Highly correlated
19 ZNF723 1 15.2 Weakly correlated
20 ZNF707 1 74.0 Weakly correlated
21 ZNF701 1 28.9 Weakly correlated
22 ZNF684 1 99.0 Highly correlated
23 ZNF680 1 28.9 Weakly correlated
24 ZNF182 1 99.0 Highly correlated
25 ZNF215 1 99.0 Highly correlated
26 ZNF256 1 74.0 Weakly correlated
27 ZNF549 1 87.0 Moderately correlated
28 ZNF257 1 0.0 Weakly correlated
29 ZNF534 1 19.6 Weakly correlated
30 ZNF528 1 43.0 Weakly correlated
31 ZNF519 1 19.6 Weakly correlated
32 ZNF263 1 180.0 Weakly correlated
33 ZNF274 1 99.0 Highly correlated
34 ZNF483 1 99.0 Highly correlated
35 ZNF480 1 43.0 Weakly correlated
36 ZNF28 1 28.9 Weakly correlated
37 ZNF429 1 28.9 Weakly correlated
38 ZNF418 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF793 3 99.0 Highly correlated
2 ZNF479 3 6.4 Weakly correlated
3 ZNF585B 3 99.0 Highly correlated
4 ZNF506 2 28.9 Weakly correlated
5 ZNF675 2 8.6 Weakly correlated
6 ZNF586 2 43.0 Weakly correlated
7 ZNF429 1 28.9 Weakly correlated
8 ZNF707 1 74.0 Weakly correlated
9 ZNF723 1 15.2 Weakly correlated
10 ZNF251 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats