ZRdb KZFP & Repeats
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SINE_MIRC

  • Name
    MIRC
  • Repbase
    MIRc
  • Type
    SINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000976
Description :

MIRc is a pan-mammalian SINE with a 5' end derived from a tRNA, acentral deeply-conserved CORE region (shared with other MIRs), and a 3'terminal ~55bp related to an L2 LINE .
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
cgaggcagtgtggtgcagtggaaagagcactggacttggagtcaggaagacctgggttcgagtcccggctctgccacttactagctgtgtgaccttgggcaagtcacttaacctctctgagcctcagtttcctcatctgtaaaatggggataataatacctgccctgcctacctcacagggttgttgtgaggatcaaatgagataatgtatgtgaaagcgctttgtaaactgtaaagtgctatacaaatgtaaggngttattattatt
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 4434 99.0 Highly correlated
2 ZNF263 1841 180.0 Weakly correlated
3 ZNF394 1837 99.0 Highly correlated
4 ZNF92 1637 28.9 Weakly correlated
5 ZNF766 1628 43.0 Weakly correlated
6 ZFP37 1428 99.0 Highly correlated
7 ZNF2 1313 99.0 Highly correlated
8 ZKSCAN1 1091 160.0 Weakly correlated
9 ZNF589 806 28.9 Weakly correlated
10 ZFP69B 800 99.0 Highly correlated
11 ZNF18 773 160.0 Weakly correlated
12 ZNF324 755 99.0 Highly correlated
13 ZNF101 684 43.0 Weakly correlated
14 ZNF175 668 94.0 Moderately correlated
15 ZKSCAN8 594 160.0 Weakly correlated
16 ZNF584 481 99.0 Highly correlated
17 ZNF610 467 28.9 Weakly correlated
18 ZNF317 427 99.0 Highly correlated
19 ZNF197 420 99.0 Highly correlated
20 ZNF680 418 28.9 Weakly correlated
21 ZNF558 416 99.0 Highly correlated
22 ZIM3 410 87.0 Moderately correlated
23 ZNF479 341 6.4 Weakly correlated
24 ZNF701 335 28.9 Weakly correlated
25 ZNF554 334 99.0 Highly correlated
26 ZNF534 326 19.6 Weakly correlated
27 ZNF679 290 28.9 Weakly correlated
28 ZNF705B 269 28.9 Weakly correlated
29 ZNF597 253 94.0 Moderately correlated
30 ZNF723 231 15.2 Weakly correlated
31 ZNF792 226 94.0 Moderately correlated
32 ZNF528 182 43.0 Weakly correlated
33 ZNF793 180 99.0 Highly correlated
34 ZNF75D 149 94.0 Moderately correlated
35 ZNF257 148 0.0 Weakly correlated
36 ZNF705D 146 28.9 Weakly correlated
37 ZNF251 139 94.0 Moderately correlated
38 ZNF320 100 28.9 Weakly correlated
39 ZNF274 90 99.0 Highly correlated
40 ZFP57 83 87.0 Moderately correlated
41 ZNF28 83 28.9 Weakly correlated
42 ZNF490 77 43.0 Weakly correlated
43 ZNF264 75 99.0 Highly correlated
44 ZNF282 75 319.0 Weakly correlated
45 ZNF585B 72 99.0 Highly correlated
46 ZNF485 71 94.0 Moderately correlated
47 ZNF8 69 99.0 Highly correlated
48 ZNF486 68 8.6 Weakly correlated
49 ZNF549 67 87.0 Moderately correlated
50 ZNF778 66 74.0 Weakly correlated
51 ZNF547 64 74.0 Weakly correlated
52 ZNF641 62 99.0 Highly correlated
53 ZNF140 61 99.0 Highly correlated
54 ZNF133 60 99.0 Highly correlated
55 ZNF425 60 94.0 Moderately correlated
56 ZNF436 57 180.0 Weakly correlated
57 ZNF695 56 28.9 Weakly correlated
58 ZNF735 56 28.9 Weakly correlated
59 ZNF273 54 28.9 Weakly correlated
60 ZNF506 54 28.9 Weakly correlated
61 ZNF441 53 43.0 Weakly correlated
62 ZNF331 51 94.0 Moderately correlated
63 ZKSCAN5 49 160.0 Weakly correlated
64 ZNF429 47 28.9 Weakly correlated
65 ZNF202 45 160.0 Weakly correlated
66 ZFP28 44 99.0 Highly correlated
67 ZNF519 44 19.6 Weakly correlated
68 ZNF707 42 74.0 Weakly correlated
69 ZNF141 39 43.0 Weakly correlated
70 ZNF182 36 99.0 Highly correlated
71 ZNF563 35 28.9 Weakly correlated
72 ZNF585A 30 99.0 Highly correlated
73 ZNF169 29 94.0 Moderately correlated
74 ZNF682 25 28.9 Weakly correlated
75 ZNF816 25 28.9 Weakly correlated
76 ZNF189 24 99.0 Highly correlated
77 ZNF468 24 28.9 Weakly correlated
78 ZNF26 23 99.0 Highly correlated
79 ZNF75A 23 94.0 Moderately correlated
80 ZNF12 22 99.0 Highly correlated
81 ZNF786 22 99.0 Highly correlated
82 ZNF671 21 94.0 Moderately correlated
83 ZNF674 21 99.0 Highly correlated
84 ZNF30 20 94.0 Moderately correlated
85 ZNF41 20 99.0 Highly correlated
86 ZNF347 18 43.0 Weakly correlated
87 ZNF471 17 94.0 Moderately correlated
88 ZNF808 17 19.6 Weakly correlated
89 ZNF248 15 99.0 Highly correlated
90 ZNF343 15 74.0 Weakly correlated
91 ZNF350 15 99.0 Highly correlated
92 ZNF230 14 28.9 Weakly correlated
93 ZNF334 14 99.0 Highly correlated
94 ZNF284 13 43.0 Weakly correlated
95 ZNF33A 13 99.0 Highly correlated
96 ZNF510 13 99.0 Highly correlated
97 ZNF716 13 19.6 Weakly correlated
98 ZNF765 13 8.6 Weakly correlated
99 ZNF44 12 43.0 Weakly correlated
100 ZNF677 12 99.0 Highly correlated
101 ZNF879 12 99.0 Highly correlated
102 ZNF440 11 28.9 Weakly correlated
103 ZNF483 11 99.0 Highly correlated
104 ZNF845 11 28.9 Weakly correlated
105 ZNF878 11 43.0 Weakly correlated
106 ZNF100 10 28.9 Weakly correlated
107 ZNF135 10 94.0 Moderately correlated
108 ZNF559 10 74.0 Weakly correlated
109 ZNF605 10 99.0 Highly correlated
110 ZNF91 10 6.0 Weakly correlated
111 ZNF93 10 8.6 Weakly correlated
112 ZNF17 9 69.0 Weakly correlated
113 ZNF287 9 99.0 Highly correlated
114 ZNF337 9 43.0 Weakly correlated
115 ZNF445 9 99.0 Highly correlated
116 ZNF560 9 43.0 Weakly correlated
117 ZNF573 9 94.0 Moderately correlated
118 ZNF730 9 19.6 Weakly correlated
119 ZNF823 9 43.0 Weakly correlated
120 ZNF224 8 69.0 Weakly correlated
121 ZNF418 8 43.0 Weakly correlated
122 ZNF420 8 94.0 Moderately correlated
123 ZFP30 7 99.0 Highly correlated
124 ZNF304 7 99.0 Highly correlated
125 ZNF433 7 43.0 Weakly correlated
126 ZNF611 7 19.6 Weakly correlated
127 ZNF667 7 99.0 Highly correlated
128 ZNF669 7 43.0 Weakly correlated
129 ZNF675 7 8.6 Weakly correlated
130 ZNF789 7 99.0 Highly correlated
131 ZNF84 7 99.0 Highly correlated
132 RBAK 6 99.0 Highly correlated
133 ZNF157 6 99.0 Highly correlated
134 ZNF543 6 99.0 Highly correlated
135 ZNF586 6 43.0 Weakly correlated
136 ZNF684 6 99.0 Highly correlated
137 ZNF727 6 19.6 Weakly correlated
138 ZNF799 6 43.0 Weakly correlated
139 ZNF85 6 28.9 Weakly correlated
140 ZNF214 5 99.0 Highly correlated
141 ZNF250 5 99.0 Highly correlated
142 ZNF333 5 99.0 Highly correlated
143 ZNF354C 5 99.0 Highly correlated
144 ZNF578 5 15.2 Weakly correlated
145 ZNF596 5 94.0 Moderately correlated
146 ZNF700 5 28.9 Weakly correlated
147 ZNF780A 5 43.0 Weakly correlated
148 ZNF7 5 99.0 Highly correlated
149 ZFP69 4 99.0 Highly correlated
150 ZKSCAN2 4 180.0 Weakly correlated
151 ZNF114 4 28.9 Weakly correlated
152 ZNF136 4 74.0 Weakly correlated
153 ZNF222 4 43.0 Weakly correlated
154 ZNF267 4 43.0 Weakly correlated
155 ZNF286A 4 160.0 Weakly correlated
156 ZNF3 4 160.0 Weakly correlated
157 ZNF567 4 99.0 Highly correlated
158 ZNF583 4 99.0 Highly correlated
159 ZNF606 4 99.0 Highly correlated
160 ZNF813 4 28.9 Weakly correlated
161 ZFP14 3 99.0 Highly correlated
162 ZIK1 3 87.0 Moderately correlated
163 ZNF557 3 15.2 Weakly correlated
164 ZNF561 3 43.0 Weakly correlated
165 ZNF613 3 99.0 Highly correlated
166 ZNF626 3 0.0 Weakly correlated
167 ZNF736 3 43.0 Weakly correlated
168 ZNF763 3 15.2 Weakly correlated
169 ZNF860 3 0.0 Weakly correlated
170 PRDM9 2 0.0 Weakly correlated
171 ZFP82 2 99.0 Highly correlated
172 ZNF14 2 69.0 Weakly correlated
173 ZNF160 2 74.0 Weakly correlated
174 ZNF177 2 94.0 Moderately correlated
175 ZNF225 2 74.0 Weakly correlated
176 ZNF234 2 99.0 Highly correlated
177 ZNF283 2 99.0 Highly correlated
178 ZNF383 2 99.0 Highly correlated
179 ZNF417 2 28.9 Weakly correlated
180 ZNF454 2 99.0 Highly correlated
181 ZNF480 2 43.0 Weakly correlated
182 ZNF500 2 160.0 Weakly correlated
183 ZNF527 2 99.0 Highly correlated
184 ZNF552 2 28.9 Weakly correlated
185 ZNF555 2 94.0 Moderately correlated
186 ZNF571 2 99.0 Highly correlated
187 ZNF587B 2 8.6 Weakly correlated
188 ZNF599 2 99.0 Highly correlated
189 ZNF616 2 43.0 Weakly correlated
190 ZNF624 2 99.0 Highly correlated
191 ZNF627 2 74.0 Weakly correlated
192 ZNF649 2 28.9 Weakly correlated
193 ZNF699 2 99.0 Highly correlated
194 ZNF705E 2 0.0 Weakly correlated
195 ZNF718 2 19.6 Weakly correlated
196 ZNF747 2 43.0 Weakly correlated
197 ZNF77 2 87.0 Moderately correlated
198 ZNF81 2 99.0 Highly correlated
199 ZNF850 2 28.9 Weakly correlated
200 ZKSCAN3 1 99.0 Highly correlated
201 ZKSCAN4 1 99.0 Highly correlated
202 ZNF10 1 99.0 Highly correlated
203 ZNF124 1 43.0 Weakly correlated
204 ZNF132 1 94.0 Moderately correlated
205 ZNF180 1 99.0 Highly correlated
206 ZNF184 1 99.0 Highly correlated
207 ZNF223 1 43.0 Weakly correlated
208 ZNF233 1 99.0 Highly correlated
209 ZNF253 1 19.6 Weakly correlated
210 ZNF254 1 43.0 Weakly correlated
211 ZNF33B 1 99.0 Highly correlated
212 ZNF34 1 99.0 Highly correlated
213 ZNF354A 1 99.0 Highly correlated
214 ZNF37A 1 99.0 Highly correlated
215 ZNF419 1 28.9 Weakly correlated
216 ZNF430 1 19.6 Weakly correlated
217 ZNF431 1 28.9 Weakly correlated
218 ZNF432 1 99.0 Highly correlated
219 ZNF43 1 43.0 Weakly correlated
220 ZNF443 1 19.6 Weakly correlated
221 ZNF460 1 74.0 Weakly correlated
222 ZNF461 1 99.0 Highly correlated
223 ZNF484 1 99.0 Highly correlated
224 ZNF514 1 94.0 Moderately correlated
225 ZNF525 1 19.6 Weakly correlated
226 ZNF529 1 99.0 Highly correlated
227 ZNF530 1 28.9 Weakly correlated
228 ZNF540 1 87.0 Moderately correlated
229 ZNF544 1 0.0 Weakly correlated
230 ZNF551 1 94.0 Moderately correlated
231 ZNF562 1 28.9 Weakly correlated
232 ZNF564 1 74.0 Weakly correlated
233 ZNF565 1 99.0 Highly correlated
234 ZNF568 1 99.0 Highly correlated
235 ZNF570 1 99.0 Highly correlated
236 ZNF577 1 94.0 Moderately correlated
237 ZNF582 1 99.0 Highly correlated
238 ZNF587 1 28.9 Weakly correlated
239 ZNF607 1 43.0 Weakly correlated
240 ZNF681 1 28.9 Weakly correlated
241 ZNF689 1 99.0 Highly correlated
242 ZNF69 1 28.9 Weakly correlated
243 ZNF726 1 28.9 Weakly correlated
244 ZNF749 1 28.9 Weakly correlated
245 ZNF761 1 19.6 Weakly correlated
246 ZNF764 1 160.0 Weakly correlated
247 ZNF777 1 319.0 Weakly correlated
248 ZNF790 1 99.0 Highly correlated
249 ZNF852 1 94.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF92 1181 28.9 Weakly correlated
2 ZNF263 154 180.0 Weakly correlated
3 ZNF479 102 6.4 Weakly correlated
4 ZIM3 93 87.0 Moderately correlated
5 ZNF534 93 19.6 Weakly correlated
6 ZNF382 92 99.0 Highly correlated
7 ZNF723 79 15.2 Weakly correlated
8 ZNF101 64 43.0 Weakly correlated
9 ZNF589 62 28.9 Weakly correlated
10 ZFP37 58 99.0 Highly correlated
11 ZNF766 55 43.0 Weakly correlated
12 ZKSCAN1 54 160.0 Weakly correlated
13 ZNF701 54 28.9 Weakly correlated
14 ZNF793 52 99.0 Highly correlated
15 ZNF18 46 160.0 Weakly correlated
16 ZNF680 46 28.9 Weakly correlated
17 ZNF175 44 94.0 Moderately correlated
18 ZNF197 41 99.0 Highly correlated
19 ZNF554 41 99.0 Highly correlated
20 ZNF75D 39 94.0 Moderately correlated
21 ZNF257 38 0.0 Weakly correlated
22 ZNF584 36 99.0 Highly correlated
23 ZFP69B 29 99.0 Highly correlated
24 ZNF317 27 99.0 Highly correlated
25 ZNF679 24 28.9 Weakly correlated
26 ZNF485 22 94.0 Moderately correlated
27 ZNF528 22 43.0 Weakly correlated
28 ZKSCAN5 21 160.0 Weakly correlated
29 ZKSCAN8 21 160.0 Weakly correlated
30 ZNF2 21 99.0 Highly correlated
31 ZNF597 21 94.0 Moderately correlated
32 ZNF735 19 28.9 Weakly correlated
33 ZNF558 16 99.0 Highly correlated
34 ZNF133 15 99.0 Highly correlated
35 ZNF251 15 94.0 Moderately correlated
36 ZFP28 14 99.0 Highly correlated
37 ZNF549 13 87.0 Moderately correlated
38 ZNF320 13 28.9 Weakly correlated
39 ZNF705B 12 28.9 Weakly correlated
40 ZFP57 11 87.0 Moderately correlated
41 ZNF792 11 94.0 Moderately correlated
42 ZNF506 11 28.9 Weakly correlated
43 ZNF610 11 28.9 Weakly correlated
44 ZNF429 10 28.9 Weakly correlated
45 ZNF324 9 99.0 Highly correlated
46 ZNF140 8 99.0 Highly correlated
47 ZNF705D 8 28.9 Weakly correlated
48 ZNF141 7 43.0 Weakly correlated
49 ZNF28 7 28.9 Weakly correlated
50 ZNF585B 7 99.0 Highly correlated
51 ZNF44 7 43.0 Weakly correlated
52 ZNF282 6 319.0 Weakly correlated
53 ZNF789 6 99.0 Highly correlated
54 ZNF585A 6 99.0 Highly correlated
55 ZNF707 6 74.0 Weakly correlated
56 ZNF264 5 99.0 Highly correlated
57 ZNF440 5 28.9 Weakly correlated
58 ZNF490 5 43.0 Weakly correlated
59 ZNF677 5 99.0 Highly correlated
60 ZNF471 4 94.0 Moderately correlated
61 ZNF641 4 99.0 Highly correlated
62 ZNF695 4 28.9 Weakly correlated
63 ZNF202 4 160.0 Weakly correlated
64 ZNF248 4 99.0 Highly correlated
65 ZNF331 4 94.0 Moderately correlated
66 ZNF287 4 99.0 Highly correlated
67 ZNF347 4 43.0 Weakly correlated
68 ZNF716 4 19.6 Weakly correlated
69 ZNF778 3 74.0 Weakly correlated
70 ZNF189 3 99.0 Highly correlated
71 ZNF273 3 28.9 Weakly correlated
72 ZNF684 3 99.0 Highly correlated
73 ZNF816 3 28.9 Weakly correlated
74 ZNF436 3 180.0 Weakly correlated
75 ZNF674 3 99.0 Highly correlated
76 ZNF433 3 43.0 Weakly correlated
77 ZNF519 3 19.6 Weakly correlated
78 ZNF675 3 8.6 Weakly correlated
79 ZNF354C 2 99.0 Highly correlated
80 ZNF425 2 94.0 Moderately correlated
81 ZNF667 2 99.0 Highly correlated
82 ZNF274 2 99.0 Highly correlated
83 ZNF169 2 94.0 Moderately correlated
84 ZNF304 2 99.0 Highly correlated
85 ZNF41 2 99.0 Highly correlated
86 ZNF75A 2 94.0 Moderately correlated
87 ZNF879 2 99.0 Highly correlated
88 ZNF468 2 28.9 Weakly correlated
89 ZNF682 2 28.9 Weakly correlated
90 ZNF30 2 94.0 Moderately correlated
91 ZNF394 2 99.0 Highly correlated
92 ZNF483 2 99.0 Highly correlated
93 ZNF671 2 94.0 Moderately correlated
94 ZFP14 1 99.0 Highly correlated
95 ZFP69 1 99.0 Highly correlated
96 ZIK1 1 87.0 Moderately correlated
97 ZNF10 1 99.0 Highly correlated
98 ZNF12 1 99.0 Highly correlated
99 ZNF445 1 99.0 Highly correlated
100 ZNF486 1 8.6 Weakly correlated
101 ZNF596 1 94.0 Moderately correlated
102 ZNF765 1 8.6 Weakly correlated
103 ZNF85 1 28.9 Weakly correlated
104 ZNF135 1 94.0 Moderately correlated
105 ZNF17 1 69.0 Weakly correlated
106 ZNF563 1 28.9 Weakly correlated
107 ZNF700 1 28.9 Weakly correlated
108 ZNF823 1 43.0 Weakly correlated
109 ZNF267 1 43.0 Weakly correlated
110 ZNF26 1 99.0 Highly correlated
111 ZNF547 1 74.0 Weakly correlated
112 ZNF605 1 99.0 Highly correlated
113 ZNF250 1 99.0 Highly correlated
114 ZNF350 1 99.0 Highly correlated
115 ZNF559 1 74.0 Weakly correlated
116 ZNF343 1 74.0 Weakly correlated
117 ZNF510 1 99.0 Highly correlated
118 ZNF567 1 99.0 Highly correlated
119 ZNF626 1 0.0 Weakly correlated
120 ZNF786 1 99.0 Highly correlated
121 ZNF230 1 28.9 Weakly correlated
122 ZNF334 1 99.0 Highly correlated
123 ZNF627 1 74.0 Weakly correlated
124 ZNF182 1 99.0 Highly correlated
125 ZNF253 1 19.6 Weakly correlated
126 ZNF283 1 99.0 Highly correlated
127 ZNF808 1 19.6 Weakly correlated
128 ZNF84 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Moderately correlated
2 ZNF197 99.0 Highly correlated
3 ZNF257 0.0 Weakly correlated
4 ZNF554 99.0 Highly correlated
5 ZNF584 99.0 Highly correlated
6 ZNF585B 99.0 Highly correlated
7 ZNF589 28.9 Weakly correlated
8 ZNF75D 94.0 Moderately correlated
9 ZNF92 28.9 Weakly correlated