ZRdb KZFP & Repeats
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SINE_MIRB

  • Name
    MIRB
  • Repbase
    MIRb
  • Type
    SINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000975
Description :

MIRb is a pan-mammalian SINE with a 5' end derived from a tRNA, acentral deeply-conserved CORE region (shared with other MIRs), and a 3'terminal ~55bp related to an L2 LINE .
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
cagaggggcagcgtggtgcagtggaaagagcacgggctttggagtcagacagacctgggttcgaatcccggctctgccacttactagctgtgtgaccttgggcaagttacttaacctctctgagcctcagtttcctcatctgtaaaatggggataataatacctacctcgcagggttgttgtgaggattaaatgagataatgcatgtaaagcgcttagcacagtgcctggcacatagtaagcgctcaataaatggtagctctattatt
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 10097 99.0 Highly correlated
2 ZKSCAN1 4422 160.0 Weakly correlated
3 ZNF263 4110 180.0 Weakly correlated
4 ZNF92 3880 28.9 Weakly correlated
5 ZNF394 3830 99.0 Highly correlated
6 ZNF766 3005 43.0 Weakly correlated
7 ZFP37 2825 99.0 Highly correlated
8 ZNF2 2687 99.0 Highly correlated
9 ZNF18 1651 160.0 Weakly correlated
10 ZFP69B 1567 99.0 Highly correlated
11 ZNF589 1547 28.9 Weakly correlated
12 ZKSCAN8 1509 160.0 Weakly correlated
13 ZNF324 1428 99.0 Highly correlated
14 ZNF101 1339 43.0 Weakly correlated
15 ZNF175 1305 94.0 Moderately correlated
16 ZNF680 1180 28.9 Weakly correlated
17 ZNF317 1043 99.0 Highly correlated
18 ZNF584 914 99.0 Highly correlated
19 ZNF610 893 28.9 Weakly correlated
20 ZNF558 864 99.0 Highly correlated
21 ZIM3 842 87.0 Moderately correlated
22 ZNF197 805 99.0 Highly correlated
23 ZNF554 742 99.0 Highly correlated
24 ZNF723 660 15.2 Weakly correlated
25 ZNF479 637 6.4 Weakly correlated
26 ZNF701 622 28.9 Weakly correlated
27 ZNF534 612 19.6 Weakly correlated
28 ZNF679 580 28.9 Weakly correlated
29 ZNF705B 539 28.9 Weakly correlated
30 ZNF792 490 94.0 Moderately correlated
31 ZNF251 479 94.0 Moderately correlated
32 ZNF597 472 94.0 Moderately correlated
33 ZNF528 437 43.0 Weakly correlated
34 ZNF793 347 99.0 Highly correlated
35 ZNF705D 343 28.9 Weakly correlated
36 ZNF257 314 0.0 Weakly correlated
37 ZNF75D 281 94.0 Moderately correlated
38 ZFP57 220 87.0 Moderately correlated
39 ZNF585B 211 99.0 Highly correlated
40 ZNF320 205 28.9 Weakly correlated
41 ZNF140 195 99.0 Highly correlated
42 ZNF274 191 99.0 Highly correlated
43 ZNF490 184 43.0 Weakly correlated
44 ZNF264 179 99.0 Highly correlated
45 ZNF28 168 28.9 Weakly correlated
46 ZNF485 167 94.0 Moderately correlated
47 ZNF436 163 180.0 Weakly correlated
48 ZNF547 153 74.0 Weakly correlated
49 ZNF133 152 99.0 Highly correlated
50 ZNF429 152 28.9 Weakly correlated
51 ZNF641 143 99.0 Highly correlated
52 ZNF486 141 8.6 Weakly correlated
53 ZNF735 134 28.9 Weakly correlated
54 ZNF778 132 74.0 Weakly correlated
55 ZNF549 127 87.0 Moderately correlated
56 ZNF282 115 319.0 Weakly correlated
57 ZNF441 115 43.0 Weakly correlated
58 ZNF506 114 28.9 Weakly correlated
59 ZNF707 114 74.0 Weakly correlated
60 ZNF425 113 94.0 Moderately correlated
61 ZNF8 113 99.0 Highly correlated
62 ZNF695 110 28.9 Weakly correlated
63 ZNF331 102 94.0 Moderately correlated
64 ZKSCAN5 100 160.0 Weakly correlated
65 ZNF202 96 160.0 Weakly correlated
66 ZNF519 87 19.6 Weakly correlated
67 ZNF563 83 28.9 Weakly correlated
68 ZFP28 82 99.0 Highly correlated
69 ZNF273 79 28.9 Weakly correlated
70 ZNF141 74 43.0 Weakly correlated
71 ZNF682 70 28.9 Weakly correlated
72 ZNF26 64 99.0 Highly correlated
73 ZNF182 63 99.0 Highly correlated
74 ZNF671 53 94.0 Moderately correlated
75 ZNF585A 52 99.0 Highly correlated
76 ZNF189 49 99.0 Highly correlated
77 ZNF169 46 94.0 Moderately correlated
78 ZNF75A 45 94.0 Moderately correlated
79 ZNF468 44 28.9 Weakly correlated
80 ZNF471 44 94.0 Moderately correlated
81 ZNF765 43 8.6 Weakly correlated
82 ZNF334 42 99.0 Highly correlated
83 ZNF674 42 99.0 Highly correlated
84 ZNF12 41 99.0 Highly correlated
85 ZNF808 41 19.6 Weakly correlated
86 ZNF816 39 28.9 Weakly correlated
87 ZNF823 37 43.0 Weakly correlated
88 ZNF786 36 99.0 Highly correlated
89 ZNF41 35 99.0 Highly correlated
90 ZNF716 34 19.6 Weakly correlated
91 ZNF84 33 99.0 Highly correlated
92 ZNF573 32 94.0 Moderately correlated
93 ZNF157 31 99.0 Highly correlated
94 ZNF284 31 43.0 Weakly correlated
95 ZNF30 31 94.0 Moderately correlated
96 ZNF93 31 8.6 Weakly correlated
97 ZNF440 28 28.9 Weakly correlated
98 ZNF44 27 43.0 Weakly correlated
99 ZNF91 26 6.0 Weakly correlated
100 ZNF100 24 28.9 Weakly correlated
101 ZNF675 24 8.6 Weakly correlated
102 ZNF33A 23 99.0 Highly correlated
103 ZNF730 23 19.6 Weakly correlated
104 ZNF879 23 99.0 Highly correlated
105 ZNF347 22 43.0 Weakly correlated
106 ZNF350 22 99.0 Highly correlated
107 ZNF224 21 69.0 Weakly correlated
108 ZNF483 21 99.0 Highly correlated
109 ZNF510 21 99.0 Highly correlated
110 ZNF605 21 99.0 Highly correlated
111 ZNF780A 21 43.0 Weakly correlated
112 ZNF287 20 99.0 Highly correlated
113 ZNF343 20 74.0 Weakly correlated
114 ZNF17 19 69.0 Weakly correlated
115 ZNF283 18 99.0 Highly correlated
116 ZNF286A 18 160.0 Weakly correlated
117 ZNF559 17 74.0 Weakly correlated
118 ZNF433 16 43.0 Weakly correlated
119 ZNF543 16 99.0 Highly correlated
120 ZNF557 16 15.2 Weakly correlated
121 ZNF616 16 43.0 Weakly correlated
122 ZNF845 16 28.9 Weakly correlated
123 ZNF135 15 94.0 Moderately correlated
124 ZNF136 15 74.0 Weakly correlated
125 ZNF878 15 43.0 Weakly correlated
126 ZFP69 14 99.0 Highly correlated
127 ZNF230 14 28.9 Weakly correlated
128 ZNF354C 14 99.0 Highly correlated
129 ZNF586 14 43.0 Weakly correlated
130 ZNF77 14 87.0 Moderately correlated
131 ZNF248 13 99.0 Highly correlated
132 ZNF337 13 43.0 Weakly correlated
133 ZNF677 13 99.0 Highly correlated
134 ZNF700 13 28.9 Weakly correlated
135 ZNF222 12 43.0 Weakly correlated
136 ZNF304 12 99.0 Highly correlated
137 ZNF420 12 94.0 Moderately correlated
138 ZNF736 12 43.0 Weakly correlated
139 ZNF445 10 99.0 Highly correlated
140 ZNF727 10 19.6 Weakly correlated
141 ZNF560 9 43.0 Weakly correlated
142 ZNF611 9 19.6 Weakly correlated
143 ZNF799 9 43.0 Weakly correlated
144 ZNF124 8 43.0 Weakly correlated
145 ZNF214 8 99.0 Highly correlated
146 ZNF250 8 99.0 Highly correlated
147 ZNF354A 8 99.0 Highly correlated
148 ZNF383 8 99.0 Highly correlated
149 ZNF454 8 99.0 Highly correlated
150 ZNF460 8 74.0 Weakly correlated
151 ZNF530 8 28.9 Weakly correlated
152 ZNF567 8 99.0 Highly correlated
153 ZNF606 8 99.0 Highly correlated
154 ZNF789 8 99.0 Highly correlated
155 ZNF180 7 99.0 Highly correlated
156 ZNF565 7 99.0 Highly correlated
157 ZNF658 7 99.0 Highly correlated
158 ZNF777 7 319.0 Weakly correlated
159 ZKSCAN2 6 180.0 Weakly correlated
160 ZNF10 6 99.0 Highly correlated
161 ZNF160 6 74.0 Weakly correlated
162 ZNF184 6 99.0 Highly correlated
163 ZNF333 6 99.0 Highly correlated
164 ZNF813 6 28.9 Weakly correlated
165 ZNF81 6 99.0 Highly correlated
166 ZNF850 6 28.9 Weakly correlated
167 ZNF85 6 28.9 Weakly correlated
168 PRDM9 5 0.0 Weakly correlated
169 RBAK 5 99.0 Highly correlated
170 ZFP30 5 99.0 Highly correlated
171 ZIK1 5 87.0 Moderately correlated
172 ZNF114 5 28.9 Weakly correlated
173 ZNF418 5 43.0 Weakly correlated
174 ZNF571 5 99.0 Highly correlated
175 ZNF582 5 99.0 Highly correlated
176 ZNF595 5 43.0 Weakly correlated
177 ZNF211 4 94.0 Moderately correlated
178 ZNF34 4 99.0 Highly correlated
179 ZNF3 4 160.0 Weakly correlated
180 ZNF417 4 28.9 Weakly correlated
181 ZNF43 4 43.0 Weakly correlated
182 ZNF480 4 43.0 Weakly correlated
183 ZNF484 4 99.0 Highly correlated
184 ZNF562 4 28.9 Weakly correlated
185 ZNF587 4 28.9 Weakly correlated
186 ZNF684 4 99.0 Highly correlated
187 ZNF705E 4 0.0 Weakly correlated
188 ZNF780B 4 74.0 Weakly correlated
189 ZNF7 4 99.0 Highly correlated
190 ZNF860 4 0.0 Weakly correlated
191 ZFP90 3 99.0 Highly correlated
192 ZNF225 3 74.0 Weakly correlated
193 ZNF253 3 19.6 Weakly correlated
194 ZNF267 3 43.0 Weakly correlated
195 ZNF431 3 28.9 Weakly correlated
196 ZNF45 3 99.0 Highly correlated
197 ZNF461 3 99.0 Highly correlated
198 ZNF525 3 19.6 Weakly correlated
199 ZNF527 3 99.0 Highly correlated
200 ZNF548 3 94.0 Moderately correlated
201 ZNF555 3 94.0 Moderately correlated
202 ZNF568 3 99.0 Highly correlated
203 ZNF577 3 94.0 Moderately correlated
204 ZNF578 3 15.2 Weakly correlated
205 ZNF583 3 99.0 Highly correlated
206 ZNF613 3 99.0 Highly correlated
207 ZNF649 3 28.9 Weakly correlated
208 ZNF669 3 43.0 Weakly correlated
209 ZNF681 3 28.9 Weakly correlated
210 ZNF747 3 43.0 Weakly correlated
211 ZNF846 3 74.0 Weakly correlated
212 ZFP14 2 99.0 Highly correlated
213 ZKSCAN3 2 99.0 Highly correlated
214 ZKSCAN4 2 99.0 Highly correlated
215 ZNF177 2 94.0 Moderately correlated
216 ZNF223 2 43.0 Weakly correlated
217 ZNF354B 2 99.0 Highly correlated
218 ZNF419 2 28.9 Weakly correlated
219 ZNF430 2 19.6 Weakly correlated
220 ZNF529 2 99.0 Highly correlated
221 ZNF564 2 74.0 Weakly correlated
222 ZNF566 2 99.0 Highly correlated
223 ZNF570 2 99.0 Highly correlated
224 ZNF596 2 94.0 Moderately correlated
225 ZNF607 2 43.0 Weakly correlated
226 ZNF614 2 99.0 Highly correlated
227 ZNF667 2 99.0 Highly correlated
228 ZNF718 2 19.6 Weakly correlated
229 ZNF791 2 87.0 Moderately correlated
230 ZNF891 2 99.0 Highly correlated
231 ZFP82 1 99.0 Highly correlated
232 ZIM2 1 0.0 Weakly correlated
233 ZNF154 1 94.0 Moderately correlated
234 ZNF195 1 28.9 Weakly correlated
235 ZNF19 1 99.0 Highly correlated
236 ZNF20 1 43.0 Weakly correlated
237 ZNF215 1 99.0 Highly correlated
238 ZNF221 1 74.0 Weakly correlated
239 ZNF234 1 99.0 Highly correlated
240 ZNF25 1 99.0 Highly correlated
241 ZNF302 1 43.0 Weakly correlated
242 ZNF311 1 99.0 Highly correlated
243 ZNF37A 1 99.0 Highly correlated
244 ZNF432 1 99.0 Highly correlated
245 ZNF439 1 8.6 Weakly correlated
246 ZNF500 1 160.0 Weakly correlated
247 ZNF514 1 94.0 Moderately correlated
248 ZNF540 1 87.0 Moderately correlated
249 ZNF561 1 43.0 Weakly correlated
250 ZNF57 1 28.9 Weakly correlated
251 ZNF620 1 99.0 Highly correlated
252 ZNF626 1 0.0 Weakly correlated
253 ZNF627 1 74.0 Weakly correlated
254 ZNF665 1 28.9 Weakly correlated
255 ZNF66 1 0.0 Weakly correlated
256 ZNF699 1 99.0 Highly correlated
257 ZNF705G 1 28.9 Weakly correlated
258 ZNF726 1 28.9 Weakly correlated
259 ZNF746 1 99.0 Highly correlated
260 ZNF761 1 19.6 Weakly correlated
261 ZNF776 1 43.0 Weakly correlated
262 ZNF782 1 99.0 Highly correlated
263 ZNF790 1 99.0 Highly correlated
264 ZNF805 1 99.0 Highly correlated
265 ZNF829 1 99.0 Highly correlated
266 ZNF880 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF92 2803 28.9 Weakly correlated
2 ZKSCAN1 1158 160.0 Weakly correlated
3 ZNF263 368 180.0 Weakly correlated
4 ZKSCAN8 343 160.0 Weakly correlated
5 ZNF723 236 15.2 Weakly correlated
6 ZNF382 229 99.0 Highly correlated
7 ZNF479 181 6.4 Weakly correlated
8 ZIM3 177 87.0 Moderately correlated
9 ZNF534 152 19.6 Weakly correlated
10 ZNF101 140 43.0 Weakly correlated
11 ZNF680 127 28.9 Weakly correlated
12 ZNF589 121 28.9 Weakly correlated
13 ZNF18 120 160.0 Weakly correlated
14 ZNF766 108 43.0 Weakly correlated
15 ZNF197 94 99.0 Highly correlated
16 ZNF554 93 99.0 Highly correlated
17 ZNF175 91 94.0 Moderately correlated
18 ZNF793 83 99.0 Highly correlated
19 ZNF701 77 28.9 Weakly correlated
20 ZNF317 75 99.0 Highly correlated
21 ZFP37 74 99.0 Highly correlated
22 ZNF257 72 0.0 Weakly correlated
23 ZNF75D 69 94.0 Moderately correlated
24 ZNF584 68 99.0 Highly correlated
25 ZNF2 66 99.0 Highly correlated
26 ZNF133 54 99.0 Highly correlated
27 ZFP69B 52 99.0 Highly correlated
28 ZNF251 50 94.0 Moderately correlated
29 ZNF485 47 94.0 Moderately correlated
30 ZNF597 46 94.0 Moderately correlated
31 ZNF735 45 28.9 Weakly correlated
32 ZNF679 44 28.9 Weakly correlated
33 ZNF528 40 43.0 Weakly correlated
34 ZNF140 38 99.0 Highly correlated
35 ZNF610 34 28.9 Weakly correlated
36 ZNF490 34 43.0 Weakly correlated
37 ZNF549 31 87.0 Moderately correlated
38 ZNF324 29 99.0 Highly correlated
39 ZNF705B 29 28.9 Weakly correlated
40 ZNF264 29 99.0 Highly correlated
41 ZFP57 28 87.0 Moderately correlated
42 ZNF705D 28 28.9 Weakly correlated
43 ZKSCAN5 25 160.0 Weakly correlated
44 ZNF506 24 28.9 Weakly correlated
45 ZNF792 24 94.0 Moderately correlated
46 ZNF558 23 99.0 Highly correlated
47 ZFP28 22 99.0 Highly correlated
48 ZNF429 22 28.9 Weakly correlated
49 ZNF585B 22 99.0 Highly correlated
50 ZNF28 20 28.9 Weakly correlated
51 ZNF320 19 28.9 Weakly correlated
52 ZNF44 17 43.0 Weakly correlated
53 ZNF585A 15 99.0 Highly correlated
54 ZNF695 14 28.9 Weakly correlated
55 ZNF436 14 180.0 Weakly correlated
56 ZNF141 12 43.0 Weakly correlated
57 ZNF202 12 160.0 Weakly correlated
58 ZNF471 12 94.0 Moderately correlated
59 ZNF394 11 99.0 Highly correlated
60 ZNF189 11 99.0 Highly correlated
61 ZNF707 11 74.0 Weakly correlated
62 ZNF816 10 28.9 Weakly correlated
63 ZNF282 10 319.0 Weakly correlated
64 ZNF331 10 94.0 Moderately correlated
65 ZNF671 9 94.0 Moderately correlated
66 ZNF468 9 28.9 Weakly correlated
67 ZNF273 9 28.9 Weakly correlated
68 ZNF573 8 94.0 Moderately correlated
69 ZNF641 8 99.0 Highly correlated
70 ZNF433 8 43.0 Weakly correlated
71 ZNF563 7 28.9 Weakly correlated
72 ZNF675 7 8.6 Weakly correlated
73 ZNF440 7 28.9 Weakly correlated
74 ZNF26 7 99.0 Highly correlated
75 ZNF780A 7 43.0 Weakly correlated
76 ZNF274 7 99.0 Highly correlated
77 ZNF879 7 99.0 Highly correlated
78 ZNF483 6 99.0 Highly correlated
79 ZNF674 6 99.0 Highly correlated
80 ZNF716 6 19.6 Weakly correlated
81 ZNF823 6 43.0 Weakly correlated
82 ZNF778 6 74.0 Weakly correlated
83 ZNF10 5 99.0 Highly correlated
84 ZNF33A 5 99.0 Highly correlated
85 ZNF350 5 99.0 Highly correlated
86 ZNF343 4 74.0 Weakly correlated
87 ZNF41 4 99.0 Highly correlated
88 ZNF682 4 28.9 Weakly correlated
89 ZNF81 4 99.0 Highly correlated
90 ZNF169 4 94.0 Moderately correlated
91 ZNF8 4 99.0 Highly correlated
92 ZNF182 4 99.0 Highly correlated
93 ZNF519 4 19.6 Weakly correlated
94 ZNF808 4 19.6 Weakly correlated
95 ZNF347 3 43.0 Weakly correlated
96 ZNF789 3 99.0 Highly correlated
97 ZNF425 3 94.0 Moderately correlated
98 ZNF567 3 99.0 Highly correlated
99 ZNF287 3 99.0 Highly correlated
100 ZNF30 3 94.0 Moderately correlated
101 ZNF283 3 99.0 Highly correlated
102 ZFP69 2 99.0 Highly correlated
103 ZNF136 2 74.0 Weakly correlated
104 ZNF157 2 99.0 Highly correlated
105 ZNF530 2 28.9 Weakly correlated
106 ZNF736 2 43.0 Weakly correlated
107 ZNF383 2 99.0 Highly correlated
108 ZNF765 2 8.6 Weakly correlated
109 ZNF441 2 43.0 Weakly correlated
110 ZNF543 2 99.0 Highly correlated
111 ZNF684 2 99.0 Highly correlated
112 ZNF17 2 69.0 Weakly correlated
113 ZNF248 2 99.0 Highly correlated
114 ZNF677 2 99.0 Highly correlated
115 ZNF334 2 99.0 Highly correlated
116 ZNF780B 2 74.0 Weakly correlated
117 PRDM9 1 0.0 Weakly correlated
118 ZFP14 1 99.0 Highly correlated
119 ZNF100 1 28.9 Weakly correlated
120 ZNF12 1 99.0 Highly correlated
121 ZNF525 1 19.6 Weakly correlated
122 ZNF705G 1 28.9 Weakly correlated
123 ZNF223 1 43.0 Weakly correlated
124 ZNF225 1 74.0 Weakly correlated
125 ZNF605 1 99.0 Highly correlated
126 ZNF84 1 99.0 Highly correlated
127 ZNF224 1 69.0 Weakly correlated
128 ZNF333 1 99.0 Highly correlated
129 ZNF34 1 99.0 Highly correlated
130 ZNF484 1 99.0 Highly correlated
131 ZNF878 1 43.0 Weakly correlated
132 ZNF91 1 6.0 Weakly correlated
133 ZNF160 1 74.0 Weakly correlated
134 ZNF337 1 43.0 Weakly correlated
135 ZNF75A 1 94.0 Moderately correlated
136 ZNF606 1 99.0 Highly correlated
137 ZNF799 1 43.0 Weakly correlated
138 ZNF180 1 99.0 Highly correlated
139 ZNF354A 1 99.0 Highly correlated
140 ZNF727 1 19.6 Weakly correlated
141 ZNF510 1 99.0 Highly correlated
142 ZNF222 1 43.0 Weakly correlated
143 ZNF354C 1 99.0 Highly correlated
144 ZNF561 1 43.0 Weakly correlated
145 ZNF667 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZKSCAN1 160.0 Weakly correlated
2 ZNF175 94.0 Moderately correlated
3 ZNF197 99.0 Highly correlated
4 ZNF251 94.0 Moderately correlated
5 ZNF282 319.0 Weakly correlated
6 ZNF320 28.9 Weakly correlated
7 ZNF324 99.0 Highly correlated
8 ZNF584 99.0 Highly correlated
9 ZNF585B 99.0 Highly correlated
10 ZNF589 28.9 Weakly correlated
11 ZNF671 94.0 Moderately correlated
12 ZNF75D 94.0 Moderately correlated
13 ZNF92 28.9 Weakly correlated