ZRdb KZFP & Repeats
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SINE_MIR3

  • Name
    MIR3
  • Repbase
    MIR3
  • Type
    SINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000974
Description :

MIR3 is a pan-mammalian SINE with a 5' end derived from a tRNA, acentral deeply-conserved CORE region (shared with other MIRs), and a 3'terminal ~55bp related to an L3 LINE .
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctggcagagtggctgagcagagagagcacggactgggagtcaggagacctgggttctagtcccggctctgccactaactngctgtgtgaccttgggcaagtcacttcacctctctgggcctcagtttcctcatctgtaaaatgagggggttggactagatgatctctaaggtcccttccagctctgacattctatgattctatgattc
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 3774 99.0 Highly correlated
2 ZNF263 1902 180.0 Weakly correlated
3 ZNF394 1750 99.0 Highly correlated
4 ZNF766 1681 43.0 Weakly correlated
5 ZFP37 1422 99.0 Highly correlated
6 ZNF2 1299 99.0 Highly correlated
7 ZKSCAN1 900 160.0 Weakly correlated
8 ZNF92 811 28.9 Weakly correlated
9 ZNF589 785 28.9 Weakly correlated
10 ZFP69B 742 99.0 Highly correlated
11 ZNF18 703 160.0 Weakly correlated
12 ZNF175 677 94.0 Moderately correlated
13 ZNF324 641 99.0 Highly correlated
14 ZNF101 639 43.0 Weakly correlated
15 ZKSCAN8 522 160.0 Weakly correlated
16 ZNF584 470 99.0 Highly correlated
17 ZNF610 441 28.9 Weakly correlated
18 ZNF197 432 99.0 Highly correlated
19 ZIM3 405 87.0 Moderately correlated
20 ZNF534 399 19.6 Weakly correlated
21 ZNF479 377 6.4 Weakly correlated
22 ZNF680 376 28.9 Weakly correlated
23 ZNF317 368 99.0 Highly correlated
24 ZNF558 364 99.0 Highly correlated
25 ZNF554 297 99.0 Highly correlated
26 ZNF597 291 94.0 Moderately correlated
27 ZNF705B 278 28.9 Weakly correlated
28 ZNF701 263 28.9 Weakly correlated
29 ZNF793 225 99.0 Highly correlated
30 ZNF528 218 43.0 Weakly correlated
31 ZNF679 215 28.9 Weakly correlated
32 ZNF257 197 0.0 Weakly correlated
33 ZNF723 187 15.2 Weakly correlated
34 ZNF792 174 94.0 Moderately correlated
35 ZNF705D 167 28.9 Weakly correlated
36 ZNF320 119 28.9 Weakly correlated
37 ZNF75D 109 94.0 Moderately correlated
38 ZNF251 102 94.0 Moderately correlated
39 ZNF274 93 99.0 Highly correlated
40 ZNF28 87 28.9 Weakly correlated
41 ZFP57 73 87.0 Moderately correlated
42 ZNF282 72 319.0 Weakly correlated
43 ZNF264 71 99.0 Highly correlated
44 ZNF547 64 74.0 Weakly correlated
45 ZNF641 61 99.0 Highly correlated
46 ZNF140 60 99.0 Highly correlated
47 ZNF202 60 160.0 Weakly correlated
48 ZNF8 59 99.0 Highly correlated
49 ZNF133 58 99.0 Highly correlated
50 ZNF429 58 28.9 Weakly correlated
51 ZNF506 58 28.9 Weakly correlated
52 ZNF425 57 94.0 Moderately correlated
53 ZNF485 57 94.0 Moderately correlated
54 ZNF490 57 43.0 Weakly correlated
55 ZNF707 57 74.0 Weakly correlated
56 ZNF273 56 28.9 Weakly correlated
57 ZNF585B 56 99.0 Highly correlated
58 ZNF682 53 28.9 Weakly correlated
59 ZNF436 51 180.0 Weakly correlated
60 ZNF778 50 74.0 Weakly correlated
61 ZNF519 47 19.6 Weakly correlated
62 ZNF735 47 28.9 Weakly correlated
63 ZNF486 46 8.6 Weakly correlated
64 ZNF549 45 87.0 Moderately correlated
65 ZNF695 45 28.9 Weakly correlated
66 ZNF441 43 43.0 Weakly correlated
67 ZFP28 41 99.0 Highly correlated
68 ZNF141 40 43.0 Weakly correlated
69 ZNF331 40 94.0 Moderately correlated
70 ZKSCAN5 39 160.0 Weakly correlated
71 ZNF468 32 28.9 Weakly correlated
72 ZNF189 29 99.0 Highly correlated
73 ZNF84 29 99.0 Highly correlated
74 ZNF182 26 99.0 Highly correlated
75 ZNF563 26 28.9 Weakly correlated
76 ZNF585A 26 99.0 Highly correlated
77 ZNF786 25 99.0 Highly correlated
78 ZNF41 20 99.0 Highly correlated
79 ZNF471 20 94.0 Moderately correlated
80 ZNF816 20 28.9 Weakly correlated
81 ZNF169 18 94.0 Moderately correlated
82 ZNF671 18 94.0 Moderately correlated
83 ZNF808 18 19.6 Weakly correlated
84 ZNF75A 17 94.0 Moderately correlated
85 ZNF347 16 43.0 Weakly correlated
86 ZNF91 16 6.0 Weakly correlated
87 ZNF334 15 99.0 Highly correlated
88 ZNF33A 14 99.0 Highly correlated
89 ZNF12 13 99.0 Highly correlated
90 ZNF765 13 8.6 Weakly correlated
91 ZNF100 12 28.9 Weakly correlated
92 ZNF224 12 69.0 Weakly correlated
93 ZNF284 12 43.0 Weakly correlated
94 ZNF343 12 74.0 Weakly correlated
95 ZNF420 12 94.0 Moderately correlated
96 ZNF44 12 43.0 Weakly correlated
97 ZNF677 12 99.0 Highly correlated
98 ZNF823 12 43.0 Weakly correlated
99 ZNF230 11 28.9 Weakly correlated
100 ZNF543 11 99.0 Highly correlated
101 ZNF674 11 99.0 Highly correlated
102 ZNF675 11 8.6 Weakly correlated
103 ZNF157 10 99.0 Highly correlated
104 ZNF30 10 94.0 Moderately correlated
105 ZNF433 10 43.0 Weakly correlated
106 ZNF483 10 99.0 Highly correlated
107 ZNF611 10 19.6 Weakly correlated
108 ZNF780A 10 43.0 Weakly correlated
109 ZNF222 9 43.0 Weakly correlated
110 ZNF287 9 99.0 Highly correlated
111 ZNF605 9 99.0 Highly correlated
112 ZNF85 9 28.9 Weakly correlated
113 ZNF878 9 43.0 Weakly correlated
114 ZNF17 8 69.0 Weakly correlated
115 ZNF26 8 99.0 Highly correlated
116 ZNF283 8 99.0 Highly correlated
117 ZNF559 8 74.0 Weakly correlated
118 ZNF616 8 43.0 Weakly correlated
119 ZNF667 8 99.0 Highly correlated
120 ZNF684 8 99.0 Highly correlated
121 ZNF716 8 19.6 Weakly correlated
122 ZNF337 7 43.0 Weakly correlated
123 ZNF350 7 99.0 Highly correlated
124 ZNF383 7 99.0 Highly correlated
125 ZNF440 7 28.9 Weakly correlated
126 ZNF557 7 15.2 Weakly correlated
127 ZNF560 7 43.0 Weakly correlated
128 ZNF93 7 8.6 Weakly correlated
129 ZFP30 6 99.0 Highly correlated
130 ZNF248 6 99.0 Highly correlated
131 ZNF333 6 99.0 Highly correlated
132 ZNF354C 6 99.0 Highly correlated
133 ZNF445 6 99.0 Highly correlated
134 ZNF510 6 99.0 Highly correlated
135 ZNF567 6 99.0 Highly correlated
136 ZNF789 6 99.0 Highly correlated
137 ZNF845 6 28.9 Weakly correlated
138 ZNF135 5 94.0 Moderately correlated
139 ZNF160 5 74.0 Weakly correlated
140 ZNF286A 5 160.0 Weakly correlated
141 ZNF304 5 99.0 Highly correlated
142 ZNF530 5 28.9 Weakly correlated
143 ZNF565 5 99.0 Highly correlated
144 ZNF573 5 94.0 Moderately correlated
145 ZNF700 5 28.9 Weakly correlated
146 ZNF730 5 19.6 Weakly correlated
147 ZNF879 5 99.0 Highly correlated
148 ZFP69 4 99.0 Highly correlated
149 ZNF136 4 74.0 Weakly correlated
150 ZNF180 4 99.0 Highly correlated
151 ZNF267 4 43.0 Weakly correlated
152 ZNF480 4 43.0 Weakly correlated
153 ZNF578 4 15.2 Weakly correlated
154 ZNF586 4 43.0 Weakly correlated
155 ZNF596 4 94.0 Moderately correlated
156 ZNF777 4 319.0 Weakly correlated
157 RBAK 3 99.0 Highly correlated
158 ZNF184 3 99.0 Highly correlated
159 ZNF3 3 160.0 Weakly correlated
160 ZNF431 3 28.9 Weakly correlated
161 ZNF454 3 99.0 Highly correlated
162 ZNF568 3 99.0 Highly correlated
163 ZNF571 3 99.0 Highly correlated
164 ZNF665 3 28.9 Weakly correlated
165 ZNF736 3 43.0 Weakly correlated
166 ZNF77 3 87.0 Moderately correlated
167 ZNF813 3 28.9 Weakly correlated
168 ZNF81 3 99.0 Highly correlated
169 ZFP14 2 99.0 Highly correlated
170 ZFP82 2 99.0 Highly correlated
171 ZFP90 2 99.0 Highly correlated
172 ZIK1 2 87.0 Moderately correlated
173 ZKSCAN2 2 180.0 Weakly correlated
174 ZNF10 2 99.0 Highly correlated
175 ZNF19 2 99.0 Highly correlated
176 ZNF211 2 94.0 Moderately correlated
177 ZNF34 2 99.0 Highly correlated
178 ZNF418 2 43.0 Weakly correlated
179 ZNF430 2 19.6 Weakly correlated
180 ZNF484 2 99.0 Highly correlated
181 ZNF562 2 28.9 Weakly correlated
182 ZNF587 2 28.9 Weakly correlated
183 ZNF606 2 99.0 Highly correlated
184 ZNF607 2 43.0 Weakly correlated
185 ZNF613 2 99.0 Highly correlated
186 ZNF626 2 0.0 Weakly correlated
187 ZNF799 2 43.0 Weakly correlated
188 ZNF846 2 74.0 Weakly correlated
189 ZNF850 2 28.9 Weakly correlated
190 ZNF891 2 99.0 Highly correlated
191 PRDM9 1 0.0 Weakly correlated
192 ZNF114 1 28.9 Weakly correlated
193 ZNF124 1 43.0 Weakly correlated
194 ZNF132 1 94.0 Moderately correlated
195 ZNF154 1 94.0 Moderately correlated
196 ZNF177 1 94.0 Moderately correlated
197 ZNF214 1 99.0 Highly correlated
198 ZNF223 1 43.0 Weakly correlated
199 ZNF253 1 19.6 Weakly correlated
200 ZNF254 1 43.0 Weakly correlated
201 ZNF354A 1 99.0 Highly correlated
202 ZNF37A 1 99.0 Highly correlated
203 ZNF417 1 28.9 Weakly correlated
204 ZNF419 1 28.9 Weakly correlated
205 ZNF426 1 87.0 Moderately correlated
206 ZNF432 1 99.0 Highly correlated
207 ZNF439 1 8.6 Weakly correlated
208 ZNF460 1 74.0 Weakly correlated
209 ZNF461 1 99.0 Highly correlated
210 ZNF514 1 94.0 Moderately correlated
211 ZNF527 1 99.0 Highly correlated
212 ZNF529 1 99.0 Highly correlated
213 ZNF550 1 94.0 Moderately correlated
214 ZNF555 1 94.0 Moderately correlated
215 ZNF561 1 43.0 Weakly correlated
216 ZNF57 1 28.9 Weakly correlated
217 ZNF582 1 99.0 Highly correlated
218 ZNF583 1 99.0 Highly correlated
219 ZNF624 1 99.0 Highly correlated
220 ZNF627 1 74.0 Weakly correlated
221 ZNF66 1 0.0 Weakly correlated
222 ZNF705E 1 0.0 Weakly correlated
223 ZNF718 1 19.6 Weakly correlated
224 ZNF726 1 28.9 Weakly correlated
225 ZNF727 1 19.6 Weakly correlated
226 ZNF776 1 43.0 Weakly correlated
227 ZNF780B 1 74.0 Weakly correlated
228 ZNF860 1 0.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF92 388 28.9 Weakly correlated
2 ZNF263 155 180.0 Weakly correlated
3 ZNF534 144 19.6 Weakly correlated
4 ZNF479 129 6.4 Weakly correlated
5 ZIM3 101 87.0 Moderately correlated
6 ZNF766 63 43.0 Weakly correlated
7 ZNF793 61 99.0 Highly correlated
8 ZNF382 51 99.0 Highly correlated
9 ZNF554 51 99.0 Highly correlated
10 ZNF723 49 15.2 Weakly correlated
11 ZNF680 47 28.9 Weakly correlated
12 ZFP37 45 99.0 Highly correlated
13 ZNF597 42 94.0 Moderately correlated
14 ZNF528 40 43.0 Weakly correlated
15 ZNF101 37 43.0 Weakly correlated
16 ZNF257 37 0.0 Weakly correlated
17 ZNF589 37 28.9 Weakly correlated
18 ZNF18 34 160.0 Weakly correlated
19 ZNF197 33 99.0 Highly correlated
20 ZNF175 32 94.0 Moderately correlated
21 ZKSCAN1 28 160.0 Weakly correlated
22 ZNF75D 26 94.0 Moderately correlated
23 ZNF317 26 99.0 Highly correlated
24 ZNF584 26 99.0 Highly correlated
25 ZNF679 24 28.9 Weakly correlated
26 ZNF2 20 99.0 Highly correlated
27 ZNF485 18 94.0 Moderately correlated
28 ZNF506 18 28.9 Weakly correlated
29 ZNF701 15 28.9 Weakly correlated
30 ZFP69B 14 99.0 Highly correlated
31 ZNF320 14 28.9 Weakly correlated
32 ZNF324 13 99.0 Highly correlated
33 ZNF282 12 319.0 Weakly correlated
34 ZNF610 12 28.9 Weakly correlated
35 ZKSCAN5 11 160.0 Weakly correlated
36 ZNF490 11 43.0 Weakly correlated
37 ZNF429 11 28.9 Weakly correlated
38 ZNF707 11 74.0 Weakly correlated
39 ZFP28 10 99.0 Highly correlated
40 ZNF141 10 43.0 Weakly correlated
41 ZNF28 9 28.9 Weakly correlated
42 ZNF433 9 43.0 Weakly correlated
43 ZNF735 8 28.9 Weakly correlated
44 ZNF705B 8 28.9 Weakly correlated
45 ZNF705D 8 28.9 Weakly correlated
46 ZKSCAN8 7 160.0 Weakly correlated
47 ZNF558 7 99.0 Highly correlated
48 ZNF671 7 94.0 Moderately correlated
49 ZNF468 7 28.9 Weakly correlated
50 ZNF585A 7 99.0 Highly correlated
51 ZNF549 7 87.0 Moderately correlated
52 ZFP57 6 87.0 Moderately correlated
53 ZNF133 6 99.0 Highly correlated
54 ZNF264 6 99.0 Highly correlated
55 ZNF273 6 28.9 Weakly correlated
56 ZNF677 6 99.0 Highly correlated
57 ZNF331 5 94.0 Moderately correlated
58 ZNF792 5 94.0 Moderately correlated
59 ZNF84 5 99.0 Highly correlated
60 ZNF778 5 74.0 Weakly correlated
61 ZNF251 5 94.0 Moderately correlated
62 ZNF140 4 99.0 Highly correlated
63 ZNF684 4 99.0 Highly correlated
64 ZNF695 4 28.9 Weakly correlated
65 ZNF682 4 28.9 Weakly correlated
66 ZNF189 4 99.0 Highly correlated
67 ZNF667 3 99.0 Highly correlated
68 ZNF816 3 28.9 Weakly correlated
69 ZNF75A 3 94.0 Moderately correlated
70 ZNF611 3 19.6 Weakly correlated
71 ZFP14 2 99.0 Highly correlated
72 ZFP69 2 99.0 Highly correlated
73 ZNF100 2 28.9 Weakly correlated
74 ZNF157 2 99.0 Highly correlated
75 ZNF440 2 28.9 Weakly correlated
76 ZNF573 2 94.0 Moderately correlated
77 ZNF530 2 28.9 Weakly correlated
78 ZNF44 2 43.0 Weakly correlated
79 ZNF823 2 43.0 Weakly correlated
80 ZNF350 2 99.0 Highly correlated
81 ZNF471 2 94.0 Moderately correlated
82 ZNF567 2 99.0 Highly correlated
83 ZNF8 2 99.0 Highly correlated
84 ZNF182 2 99.0 Highly correlated
85 ZNF33A 2 99.0 Highly correlated
86 ZNF585B 2 99.0 Highly correlated
87 ZNF641 2 99.0 Highly correlated
88 ZNF605 2 99.0 Highly correlated
89 ZNF347 2 43.0 Weakly correlated
90 ZNF394 2 99.0 Highly correlated
91 ZNF789 2 99.0 Highly correlated
92 ZNF160 1 74.0 Weakly correlated
93 ZNF420 1 94.0 Moderately correlated
94 ZNF425 1 94.0 Moderately correlated
95 ZNF26 1 99.0 Highly correlated
96 ZNF441 1 43.0 Weakly correlated
97 ZNF66 1 0.0 Weakly correlated
98 ZNF674 1 99.0 Highly correlated
99 ZNF274 1 99.0 Highly correlated
100 ZNF287 1 99.0 Highly correlated
101 ZNF383 1 99.0 Highly correlated
102 ZNF483 1 99.0 Highly correlated
103 ZNF845 1 28.9 Weakly correlated
104 ZNF135 1 94.0 Moderately correlated
105 ZNF267 1 43.0 Weakly correlated
106 ZNF417 1 28.9 Weakly correlated
107 ZNF846 1 74.0 Weakly correlated
108 ZNF85 1 28.9 Weakly correlated
109 ZNF445 1 99.0 Highly correlated
110 ZNF563 1 28.9 Weakly correlated
111 ZNF675 1 8.6 Weakly correlated
112 ZNF860 1 0.0 Weakly correlated
113 ZNF17 1 69.0 Weakly correlated
114 ZNF582 1 99.0 Highly correlated
115 ZNF81 1 99.0 Highly correlated
116 ZNF879 1 99.0 Highly correlated
117 ZNF596 1 94.0 Moderately correlated
118 ZNF780A 1 43.0 Weakly correlated
119 ZNF224 1 69.0 Weakly correlated
120 ZNF484 1 99.0 Highly correlated
121 ZNF519 1 19.6 Weakly correlated
122 ZNF559 1 74.0 Weakly correlated
123 ZNF665 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP69B 99.0 Highly correlated
2 ZNF175 94.0 Moderately correlated
3 ZNF197 99.0 Highly correlated
4 ZNF257 0.0 Weakly correlated
5 ZNF273 28.9 Weakly correlated
6 ZNF282 319.0 Weakly correlated
7 ZNF2 99.0 Highly correlated
8 ZNF554 99.0 Highly correlated
9 ZNF584 99.0 Highly correlated
10 ZNF589 28.9 Weakly correlated
11 ZNF701 28.9 Weakly correlated
12 ZNF75D 94.0 Moderately correlated
13 ZNF92 28.9 Weakly correlated