ZRdb KZFP & Repeats
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SINE_MIR1_AMN

  • Name
    MIR1_AMN
  • Repbase
    MIR1_AMi
  • Type
    SINE
  • Emergence
    319.0 Mya
  • Dfam Id
    DF0001253
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tagggaggcagtgtggtctagtggatagagcactggactgggactcgggagacctgggttcnantcccggctctgccactngccngctgngtgaccttgggcaagtcacttnacctctctgngcctcagtttcctcatctgtaaaatggggataatgatactgacctcctttgtaaagtgctttgagatctactgatgaaaagtgctacataagagctaggtattattat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 592 99.0 Weakly correlated
2 ZNF92 342 28.9 Weakly correlated
3 ZNF263 323 180.0 Weakly correlated
4 ZNF394 299 99.0 Weakly correlated
5 ZNF766 285 43.0 Weakly correlated
6 ZFP37 249 99.0 Weakly correlated
7 ZNF2 227 99.0 Weakly correlated
8 ZKSCAN1 203 160.0 Weakly correlated
9 ZFP69B 156 99.0 Weakly correlated
10 ZNF589 150 28.9 Weakly correlated
11 ZNF18 138 160.0 Weakly correlated
12 ZNF175 133 94.0 Weakly correlated
13 ZNF324 129 99.0 Weakly correlated
14 ZKSCAN8 124 160.0 Weakly correlated
15 ZNF101 109 43.0 Weakly correlated
16 ZNF584 95 99.0 Weakly correlated
17 ZNF197 85 99.0 Weakly correlated
18 ZNF610 85 28.9 Weakly correlated
19 ZNF534 69 19.6 Weakly correlated
20 ZNF479 64 6.4 Weakly correlated
21 ZNF558 62 99.0 Weakly correlated
22 ZNF701 55 28.9 Weakly correlated
23 ZNF680 54 28.9 Weakly correlated
24 ZNF597 47 94.0 Weakly correlated
25 ZNF317 44 99.0 Weakly correlated
26 ZNF554 43 99.0 Weakly correlated
27 ZIM3 37 87.0 Weakly correlated
28 ZNF792 34 94.0 Weakly correlated
29 ZNF705B 33 28.9 Weakly correlated
30 ZNF257 31 0.0 Weakly correlated
31 ZNF723 28 15.2 Weakly correlated
32 ZNF320 27 28.9 Weakly correlated
33 ZNF528 27 43.0 Weakly correlated
34 ZNF793 23 99.0 Weakly correlated
35 ZNF705D 21 28.9 Weakly correlated
36 ZNF436 19 180.0 Weakly correlated
37 ZNF679 19 28.9 Weakly correlated
38 ZNF75D 18 94.0 Weakly correlated
39 ZNF202 17 160.0 Weakly correlated
40 ZNF547 17 74.0 Weakly correlated
41 ZFP57 16 87.0 Weakly correlated
42 ZNF282 16 319.0 Highly correlated
43 ZNF490 16 43.0 Weakly correlated
44 ZNF506 14 28.9 Weakly correlated
45 ZNF251 13 94.0 Weakly correlated
46 ZNF274 13 99.0 Weakly correlated
47 ZNF28 13 28.9 Weakly correlated
48 ZNF641 13 99.0 Weakly correlated
49 ZNF8 13 99.0 Weakly correlated
50 ZNF585B 12 99.0 Weakly correlated
51 ZNF264 10 99.0 Weakly correlated
52 ZNF425 10 94.0 Weakly correlated
53 ZNF549 10 87.0 Weakly correlated
54 ZNF140 9 99.0 Weakly correlated
55 ZNF485 9 94.0 Weakly correlated
56 ZKSCAN5 8 160.0 Weakly correlated
57 ZNF169 8 94.0 Weakly correlated
58 ZNF133 7 99.0 Weakly correlated
59 ZNF429 7 28.9 Weakly correlated
60 ZNF141 6 43.0 Weakly correlated
61 ZNF273 6 28.9 Weakly correlated
62 ZNF343 6 74.0 Weakly correlated
63 ZNF468 6 28.9 Weakly correlated
64 ZNF519 6 19.6 Weakly correlated
65 ZNF674 6 99.0 Weakly correlated
66 ZNF560 5 43.0 Weakly correlated
67 ZNF563 5 28.9 Weakly correlated
68 ZNF585A 5 99.0 Weakly correlated
69 ZNF735 5 28.9 Weakly correlated
70 ZFP28 4 99.0 Weakly correlated
71 ZNF189 4 99.0 Weakly correlated
72 ZNF26 4 99.0 Weakly correlated
73 ZNF284 4 43.0 Weakly correlated
74 ZNF30 4 94.0 Weakly correlated
75 ZNF331 4 94.0 Weakly correlated
76 ZNF441 4 43.0 Weakly correlated
77 ZNF486 4 8.6 Weakly correlated
78 ZNF682 4 28.9 Weakly correlated
79 ZNF75A 4 94.0 Weakly correlated
80 ZNF84 4 99.0 Weakly correlated
81 ZNF100 3 28.9 Weakly correlated
82 ZNF224 3 69.0 Weakly correlated
83 ZNF573 3 94.0 Weakly correlated
84 ZNF695 3 28.9 Weakly correlated
85 ZNF707 3 74.0 Weakly correlated
86 ZNF730 3 19.6 Weakly correlated
87 ZNF808 3 19.6 Weakly correlated
88 ZNF816 3 28.9 Weakly correlated
89 ZNF823 3 43.0 Weakly correlated
90 ZNF845 3 28.9 Weakly correlated
91 RBAK 2 99.0 Weakly correlated
92 ZNF157 2 99.0 Weakly correlated
93 ZNF17 2 69.0 Weakly correlated
94 ZNF250 2 99.0 Weakly correlated
95 ZNF304 2 99.0 Weakly correlated
96 ZNF333 2 99.0 Weakly correlated
97 ZNF41 2 99.0 Weakly correlated
98 ZNF420 2 94.0 Weakly correlated
99 ZNF530 2 28.9 Weakly correlated
100 ZNF613 2 99.0 Weakly correlated
101 ZNF677 2 99.0 Weakly correlated
102 ZNF716 2 19.6 Weakly correlated
103 ZNF736 2 43.0 Weakly correlated
104 ZNF765 2 8.6 Weakly correlated
105 ZNF778 2 74.0 Weakly correlated
106 ZNF780A 2 43.0 Weakly correlated
107 ZNF786 2 99.0 Weakly correlated
108 ZNF813 2 28.9 Weakly correlated
109 ZNF878 2 43.0 Weakly correlated
110 ZFP14 1 99.0 Weakly correlated
111 ZFP30 1 99.0 Weakly correlated
112 ZFP82 1 99.0 Weakly correlated
113 ZNF12 1 99.0 Weakly correlated
114 ZNF177 1 94.0 Weakly correlated
115 ZNF180 1 99.0 Weakly correlated
116 ZNF182 1 99.0 Weakly correlated
117 ZNF248 1 99.0 Weakly correlated
118 ZNF283 1 99.0 Weakly correlated
119 ZNF286A 1 160.0 Weakly correlated
120 ZNF287 1 99.0 Weakly correlated
121 ZNF334 1 99.0 Weakly correlated
122 ZNF33A 1 99.0 Weakly correlated
123 ZNF347 1 43.0 Weakly correlated
124 ZNF34 1 99.0 Weakly correlated
125 ZNF350 1 99.0 Weakly correlated
126 ZNF354C 1 99.0 Weakly correlated
127 ZNF383 1 99.0 Weakly correlated
128 ZNF418 1 43.0 Weakly correlated
129 ZNF433 1 43.0 Weakly correlated
130 ZNF440 1 28.9 Weakly correlated
131 ZNF445 1 99.0 Weakly correlated
132 ZNF460 1 74.0 Weakly correlated
133 ZNF471 1 94.0 Weakly correlated
134 ZNF480 1 43.0 Weakly correlated
135 ZNF483 1 99.0 Weakly correlated
136 ZNF510 1 99.0 Weakly correlated
137 ZNF543 1 99.0 Weakly correlated
138 ZNF548 1 94.0 Weakly correlated
139 ZNF559 1 74.0 Weakly correlated
140 ZNF565 1 99.0 Weakly correlated
141 ZNF568 1 99.0 Weakly correlated
142 ZNF578 1 15.2 Weakly correlated
143 ZNF582 1 99.0 Weakly correlated
144 ZNF606 1 99.0 Weakly correlated
145 ZNF607 1 43.0 Weakly correlated
146 ZNF611 1 19.6 Weakly correlated
147 ZNF616 1 43.0 Weakly correlated
148 ZNF675 1 8.6 Weakly correlated
149 ZNF684 1 99.0 Weakly correlated
150 ZNF700 1 28.9 Weakly correlated
151 ZNF727 1 19.6 Weakly correlated
152 ZNF777 1 319.0 Highly correlated
153 ZNF7 1 99.0 Weakly correlated
154 ZNF85 1 28.9 Weakly correlated
155 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF92 255 28.9 Weakly correlated
2 ZNF263 20 180.0 Weakly correlated
3 ZNF479 19 6.4 Weakly correlated
4 ZNF534 17 19.6 Weakly correlated
5 ZIM3 12 87.0 Weakly correlated
6 ZNF554 11 99.0 Weakly correlated
7 ZKSCAN1 10 160.0 Weakly correlated
8 ZNF101 9 43.0 Weakly correlated
9 ZNF766 8 43.0 Weakly correlated
10 ZNF528 8 43.0 Weakly correlated
11 ZNF257 8 0.0 Weakly correlated
12 ZFP37 8 99.0 Weakly correlated
13 ZNF197 7 99.0 Weakly correlated
14 ZNF175 7 94.0 Weakly correlated
15 ZNF680 6 28.9 Weakly correlated
16 ZNF597 6 94.0 Weakly correlated
17 ZNF589 6 28.9 Weakly correlated
18 ZNF485 5 94.0 Weakly correlated
19 ZNF701 5 28.9 Weakly correlated
20 ZNF723 5 15.2 Weakly correlated
21 ZNF18 5 160.0 Weakly correlated
22 ZNF506 5 28.9 Weakly correlated
23 ZNF320 4 28.9 Weakly correlated
24 ZNF793 4 99.0 Weakly correlated
25 ZNF75D 3 94.0 Weakly correlated
26 ZNF436 3 180.0 Weakly correlated
27 ZNF584 3 99.0 Weakly correlated
28 ZKSCAN5 3 160.0 Weakly correlated
29 ZFP69B 3 99.0 Weakly correlated
30 ZNF382 3 99.0 Weakly correlated
31 ZNF549 3 87.0 Weakly correlated
32 ZNF141 2 43.0 Weakly correlated
33 ZFP57 2 87.0 Weakly correlated
34 ZKSCAN8 2 160.0 Weakly correlated
35 ZNF169 2 94.0 Weakly correlated
36 ZNF823 1 43.0 Weakly correlated
37 ZNF133 1 99.0 Weakly correlated
38 ZNF189 1 99.0 Weakly correlated
39 ZNF792 1 94.0 Weakly correlated
40 ZNF2 1 99.0 Weakly correlated
41 ZNF578 1 15.2 Weakly correlated
42 ZNF530 1 28.9 Weakly correlated
43 ZNF331 1 94.0 Weakly correlated
44 ZNF490 1 43.0 Weakly correlated
45 ZNF343 1 74.0 Weakly correlated
46 ZNF674 1 99.0 Weakly correlated
47 ZNF468 1 28.9 Weakly correlated
48 ZNF705D 1 28.9 Weakly correlated
49 ZFP28 1 99.0 Weakly correlated
50 ZNF28 1 28.9 Weakly correlated
51 ZNF282 1 319.0 Highly correlated
52 ZNF287 1 99.0 Weakly correlated
53 ZNF30 1 94.0 Weakly correlated
54 ZNF585B 1 99.0 Weakly correlated
55 ZNF816 1 28.9 Weakly correlated
56 ZNF679 1 28.9 Weakly correlated
57 ZNF429 1 28.9 Weakly correlated
58 ZFP14 1 99.0 Weakly correlated
59 ZNF202 1 160.0 Weakly correlated
60 ZNF26 1 99.0 Weakly correlated
61 ZNF273 1 28.9 Weakly correlated
62 ZNF317 1 99.0 Weakly correlated
63 ZNF677 1 99.0 Weakly correlated
64 ZNF251 1 94.0 Weakly correlated
65 ZNF383 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF197 99.0 Weakly correlated
3 ZNF257 0.0 Weakly correlated
4 ZNF263 180.0 Weakly correlated
5 ZNF554 99.0 Weakly correlated
6 ZNF589 28.9 Weakly correlated
7 ZNF92 28.9 Weakly correlated