ZRdb KZFP & Repeats
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SINE_MIR

  • Name
    MIR
  • Repbase
    MIR
  • Type
    SINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000001
Description :

MIR is a pan-mammalian SINE with a 5' end derived from a tRNA, a centraldeeply-conserved CORE region , and a 3' terminal ~55bp related to anL2 LINE.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
acagtatagcatagtggttaagagcacgggctctggagccagactgcctgggttcgaatcccggctctgccacttactagctgtgtgaccttgggcaagttacttaacctctctgtgcctcagtttcctcatctgtaaaatggggataataatagtacctacctcatagggttgttgtgaggattaaatgagttaatacatgtaaagcgcttagaacagtgcctggcacatagtaagcgctcaataaatgttagctattatt
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 7137 99.0 Highly correlated
2 ZNF92 3203 28.9 Weakly correlated
3 ZNF263 2624 180.0 Weakly correlated
4 ZNF394 2537 99.0 Highly correlated
5 ZKSCAN1 2310 160.0 Weakly correlated
6 ZNF766 1877 43.0 Weakly correlated
7 ZFP37 1833 99.0 Highly correlated
8 ZNF2 1658 99.0 Highly correlated
9 ZNF18 1074 160.0 Weakly correlated
10 ZKSCAN8 1008 160.0 Weakly correlated
11 ZNF589 976 28.9 Weakly correlated
12 ZFP69B 943 99.0 Highly correlated
13 ZNF324 939 99.0 Highly correlated
14 ZNF101 909 43.0 Weakly correlated
15 ZNF175 838 94.0 Moderately correlated
16 ZNF680 736 28.9 Weakly correlated
17 ZNF317 706 99.0 Highly correlated
18 ZNF610 631 28.9 Weakly correlated
19 ZNF584 607 99.0 Highly correlated
20 ZIM3 570 87.0 Moderately correlated
21 ZNF558 563 99.0 Highly correlated
22 ZNF197 527 99.0 Highly correlated
23 ZNF723 506 15.2 Weakly correlated
24 ZNF679 505 28.9 Weakly correlated
25 ZNF554 458 99.0 Highly correlated
26 ZNF479 418 6.4 Weakly correlated
27 ZNF534 378 19.6 Weakly correlated
28 ZNF701 370 28.9 Weakly correlated
29 ZNF705B 349 28.9 Weakly correlated
30 ZNF792 347 94.0 Moderately correlated
31 ZNF528 311 43.0 Weakly correlated
32 ZNF251 293 94.0 Moderately correlated
33 ZNF793 278 99.0 Highly correlated
34 ZNF597 273 94.0 Moderately correlated
35 ZNF705D 211 28.9 Weakly correlated
36 ZNF257 191 0.0 Weakly correlated
37 ZNF140 159 99.0 Highly correlated
38 ZFP57 143 87.0 Moderately correlated
39 ZNF490 137 43.0 Weakly correlated
40 ZNF320 133 28.9 Weakly correlated
41 ZNF274 127 99.0 Highly correlated
42 ZNF436 123 180.0 Weakly correlated
43 ZNF75D 123 94.0 Moderately correlated
44 ZNF641 122 99.0 Highly correlated
45 ZNF28 121 28.9 Weakly correlated
46 ZNF486 121 8.6 Weakly correlated
47 ZNF585B 118 99.0 Highly correlated
48 ZNF133 104 99.0 Highly correlated
49 ZNF264 104 99.0 Highly correlated
50 ZNF485 103 94.0 Moderately correlated
51 ZNF8 102 99.0 Highly correlated
52 ZNF429 101 28.9 Weakly correlated
53 ZNF778 97 74.0 Weakly correlated
54 ZNF549 93 87.0 Moderately correlated
55 ZNF441 91 43.0 Weakly correlated
56 ZNF547 87 74.0 Weakly correlated
57 ZNF331 86 94.0 Moderately correlated
58 ZNF506 81 28.9 Weakly correlated
59 ZNF425 80 94.0 Moderately correlated
60 ZNF707 80 74.0 Weakly correlated
61 ZKSCAN5 68 160.0 Weakly correlated
62 ZNF695 68 28.9 Weakly correlated
63 ZNF735 68 28.9 Weakly correlated
64 ZNF202 67 160.0 Weakly correlated
65 ZNF585A 64 99.0 Highly correlated
66 ZNF26 60 99.0 Highly correlated
67 ZNF273 60 28.9 Weakly correlated
68 ZFP28 57 99.0 Highly correlated
69 ZNF563 56 28.9 Weakly correlated
70 ZNF141 54 43.0 Weakly correlated
71 ZNF519 49 19.6 Weakly correlated
72 ZNF282 48 319.0 Weakly correlated
73 ZNF182 47 99.0 Highly correlated
74 ZNF471 41 94.0 Moderately correlated
75 ZNF671 39 94.0 Moderately correlated
76 ZNF468 36 28.9 Weakly correlated
77 ZNF284 35 43.0 Weakly correlated
78 ZNF682 35 28.9 Weakly correlated
79 ZNF786 35 99.0 Highly correlated
80 ZNF189 33 99.0 Highly correlated
81 ZNF823 29 43.0 Weakly correlated
82 ZNF12 27 99.0 Highly correlated
83 ZNF169 26 94.0 Moderately correlated
84 ZNF674 25 99.0 Highly correlated
85 ZNF677 25 99.0 Highly correlated
86 ZNF808 25 19.6 Weakly correlated
87 ZNF248 24 99.0 Highly correlated
88 ZNF93 24 8.6 Weakly correlated
89 ZNF440 22 28.9 Weakly correlated
90 ZNF780A 22 43.0 Weakly correlated
91 ZNF84 22 99.0 Highly correlated
92 ZNF716 21 19.6 Weakly correlated
93 ZNF75A 21 94.0 Moderately correlated
94 ZNF816 21 28.9 Weakly correlated
95 ZNF224 20 69.0 Weakly correlated
96 ZNF334 20 99.0 Highly correlated
97 ZNF44 20 43.0 Weakly correlated
98 ZNF33A 19 99.0 Highly correlated
99 ZNF350 19 99.0 Highly correlated
100 ZNF730 19 19.6 Weakly correlated
101 ZNF41 18 99.0 Highly correlated
102 ZNF789 17 99.0 Highly correlated
103 ZNF157 16 99.0 Highly correlated
104 ZNF765 16 8.6 Weakly correlated
105 ZNF91 16 6.0 Weakly correlated
106 ZNF30 15 94.0 Moderately correlated
107 ZNF418 15 43.0 Weakly correlated
108 ZNF879 15 99.0 Highly correlated
109 ZNF230 14 28.9 Weakly correlated
110 ZNF433 14 43.0 Weakly correlated
111 ZNF100 13 28.9 Weakly correlated
112 ZNF17 13 69.0 Weakly correlated
113 ZNF343 13 74.0 Weakly correlated
114 ZNF354C 13 99.0 Highly correlated
115 ZNF573 13 94.0 Moderately correlated
116 ZNF85 13 28.9 Weakly correlated
117 ZNF878 13 43.0 Weakly correlated
118 ZNF135 12 94.0 Moderately correlated
119 ZNF347 12 43.0 Weakly correlated
120 ZNF675 12 8.6 Weakly correlated
121 ZNF700 12 28.9 Weakly correlated
122 ZNF845 12 28.9 Weakly correlated
123 ZFP30 11 99.0 Highly correlated
124 ZNF287 11 99.0 Highly correlated
125 ZNF337 10 43.0 Weakly correlated
126 ZNF596 10 94.0 Moderately correlated
127 ZNF605 10 99.0 Highly correlated
128 ZNF727 10 19.6 Weakly correlated
129 ZNF283 9 99.0 Highly correlated
130 ZNF445 9 99.0 Highly correlated
131 ZNF483 9 99.0 Highly correlated
132 ZNF611 9 19.6 Weakly correlated
133 ZNF530 8 28.9 Weakly correlated
134 ZNF559 8 74.0 Weakly correlated
135 ZNF567 8 99.0 Highly correlated
136 ZNF582 8 99.0 Highly correlated
137 ZKSCAN2 7 180.0 Weakly correlated
138 ZNF222 7 43.0 Weakly correlated
139 ZNF333 7 99.0 Highly correlated
140 ZNF560 7 43.0 Weakly correlated
141 ZNF586 7 43.0 Weakly correlated
142 ZNF736 7 43.0 Weakly correlated
143 ZNF114 6 28.9 Weakly correlated
144 ZNF136 6 74.0 Weakly correlated
145 ZNF211 6 94.0 Moderately correlated
146 ZNF33B 6 99.0 Highly correlated
147 ZNF383 6 99.0 Highly correlated
148 ZNF510 6 99.0 Highly correlated
149 ZNF561 6 43.0 Weakly correlated
150 ZNF667 6 99.0 Highly correlated
151 ZNF684 6 99.0 Highly correlated
152 ZNF77 6 87.0 Moderately correlated
153 RBAK 5 99.0 Highly correlated
154 ZIK1 5 87.0 Moderately correlated
155 ZNF286A 5 160.0 Weakly correlated
156 ZNF304 5 99.0 Highly correlated
157 ZNF354A 5 99.0 Highly correlated
158 ZNF417 5 28.9 Weakly correlated
159 ZNF420 5 94.0 Moderately correlated
160 ZNF525 5 19.6 Weakly correlated
161 ZNF543 5 99.0 Highly correlated
162 ZNF565 5 99.0 Highly correlated
163 ZNF616 5 43.0 Weakly correlated
164 ZNF777 5 319.0 Weakly correlated
165 ZNF799 5 43.0 Weakly correlated
166 ZFP14 4 99.0 Highly correlated
167 ZFP69 4 99.0 Highly correlated
168 ZNF124 4 43.0 Weakly correlated
169 ZNF160 4 74.0 Weakly correlated
170 ZNF180 4 99.0 Highly correlated
171 ZNF19 4 99.0 Highly correlated
172 ZNF250 4 99.0 Highly correlated
173 ZNF3 4 160.0 Weakly correlated
174 ZNF470 4 99.0 Highly correlated
175 ZNF626 4 0.0 Weakly correlated
176 ZNF681 4 28.9 Weakly correlated
177 ZNF10 3 99.0 Highly correlated
178 ZNF454 3 99.0 Highly correlated
179 ZNF460 3 74.0 Weakly correlated
180 ZNF480 3 43.0 Weakly correlated
181 ZNF527 3 99.0 Highly correlated
182 ZNF557 3 15.2 Weakly correlated
183 ZNF571 3 99.0 Highly correlated
184 ZNF583 3 99.0 Highly correlated
185 ZNF587 3 28.9 Weakly correlated
186 ZNF607 3 43.0 Weakly correlated
187 ZNF813 3 28.9 Weakly correlated
188 ZNF81 3 99.0 Highly correlated
189 ZNF860 3 0.0 Weakly correlated
190 PRDM9 2 0.0 Weakly correlated
191 ZFP82 2 99.0 Highly correlated
192 ZNF184 2 99.0 Highly correlated
193 ZNF214 2 99.0 Highly correlated
194 ZNF225 2 74.0 Weakly correlated
195 ZNF267 2 43.0 Weakly correlated
196 ZNF431 2 28.9 Weakly correlated
197 ZNF432 2 99.0 Highly correlated
198 ZNF442 2 43.0 Weakly correlated
199 ZNF484 2 99.0 Highly correlated
200 ZNF529 2 99.0 Highly correlated
201 ZNF555 2 94.0 Moderately correlated
202 ZNF568 2 99.0 Highly correlated
203 ZNF613 2 99.0 Highly correlated
204 ZNF649 2 28.9 Weakly correlated
205 ZNF669 2 43.0 Weakly correlated
206 ZNF705G 2 28.9 Weakly correlated
207 ZNF776 2 43.0 Weakly correlated
208 ZNF850 2 28.9 Weakly correlated
209 ZFP1 1 99.0 Highly correlated
210 ZFP90 1 99.0 Highly correlated
211 ZNF132 1 94.0 Moderately correlated
212 ZNF154 1 94.0 Moderately correlated
213 ZNF177 1 94.0 Moderately correlated
214 ZNF181 1 94.0 Moderately correlated
215 ZNF205 1 180.0 Weakly correlated
216 ZNF223 1 43.0 Weakly correlated
217 ZNF235 1 99.0 Highly correlated
218 ZNF253 1 19.6 Weakly correlated
219 ZNF254 1 43.0 Weakly correlated
220 ZNF300 1 99.0 Highly correlated
221 ZNF302 1 43.0 Weakly correlated
222 ZNF34 1 99.0 Highly correlated
223 ZNF354B 1 99.0 Highly correlated
224 ZNF398 1 99.0 Highly correlated
225 ZNF419 1 28.9 Weakly correlated
226 ZNF439 1 8.6 Weakly correlated
227 ZNF43 1 43.0 Weakly correlated
228 ZNF45 1 99.0 Highly correlated
229 ZNF461 1 99.0 Highly correlated
230 ZNF487 1 28.9 Weakly correlated
231 ZNF550 1 94.0 Moderately correlated
232 ZNF569 1 99.0 Highly correlated
233 ZNF570 1 99.0 Highly correlated
234 ZNF577 1 94.0 Moderately correlated
235 ZNF578 1 15.2 Weakly correlated
236 ZNF595 1 43.0 Weakly correlated
237 ZNF606 1 99.0 Highly correlated
238 ZNF614 1 99.0 Highly correlated
239 ZNF615 1 99.0 Highly correlated
240 ZNF658 1 99.0 Highly correlated
241 ZNF665 1 28.9 Weakly correlated
242 ZNF718 1 19.6 Weakly correlated
243 ZNF747 1 43.0 Weakly correlated
244 ZNF749 1 28.9 Weakly correlated
245 ZNF761 1 19.6 Weakly correlated
246 ZNF764 1 160.0 Weakly correlated
247 ZNF780B 1 74.0 Weakly correlated
248 ZNF782 1 99.0 Highly correlated
249 ZNF7 1 99.0 Highly correlated
250 ZNF805 1 99.0 Highly correlated
251 ZNF846 1 74.0 Weakly correlated
252 ZNF880 1 28.9 Weakly correlated
253 ZNF891 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF92 2399 28.9 Weakly correlated
2 ZKSCAN1 514 160.0 Weakly correlated
3 ZKSCAN8 210 160.0 Weakly correlated
4 ZNF382 203 99.0 Highly correlated
5 ZNF263 202 180.0 Weakly correlated
6 ZNF723 175 15.2 Weakly correlated
7 ZNF101 144 43.0 Weakly correlated
8 ZIM3 123 87.0 Moderately correlated
9 ZNF479 96 6.4 Weakly correlated
10 ZNF534 82 19.6 Weakly correlated
11 ZNF18 74 160.0 Weakly correlated
12 ZNF317 69 99.0 Highly correlated
13 ZNF680 69 28.9 Weakly correlated
14 ZNF766 68 43.0 Weakly correlated
15 ZNF679 58 28.9 Weakly correlated
16 ZNF589 52 28.9 Weakly correlated
17 ZNF197 51 99.0 Highly correlated
18 ZFP37 50 99.0 Highly correlated
19 ZNF701 50 28.9 Weakly correlated
20 ZNF793 50 99.0 Highly correlated
21 ZNF554 48 99.0 Highly correlated
22 ZNF175 44 94.0 Moderately correlated
23 ZNF610 42 28.9 Weakly correlated
24 ZNF584 40 99.0 Highly correlated
25 ZNF485 39 94.0 Moderately correlated
26 ZNF257 37 0.0 Weakly correlated
27 ZNF2 36 99.0 Highly correlated
28 ZNF735 31 28.9 Weakly correlated
29 ZNF140 30 99.0 Highly correlated
30 ZKSCAN5 26 160.0 Weakly correlated
31 ZNF251 26 94.0 Moderately correlated
32 ZNF133 24 99.0 Highly correlated
33 ZNF585B 24 99.0 Highly correlated
34 ZNF585A 22 99.0 Highly correlated
35 ZNF490 21 43.0 Weakly correlated
36 ZFP69B 20 99.0 Highly correlated
37 ZNF792 20 94.0 Moderately correlated
38 ZNF429 19 28.9 Weakly correlated
39 ZNF264 18 99.0 Highly correlated
40 ZNF75D 18 94.0 Moderately correlated
41 ZFP57 17 87.0 Moderately correlated
42 ZNF549 17 87.0 Moderately correlated
43 ZNF528 16 43.0 Weakly correlated
44 ZFP28 15 99.0 Highly correlated
45 ZNF141 15 43.0 Weakly correlated
46 ZNF558 15 99.0 Highly correlated
47 ZNF28 14 28.9 Weakly correlated
48 ZNF320 13 28.9 Weakly correlated
49 ZNF506 13 28.9 Weakly correlated
50 ZNF324 12 99.0 Highly correlated
51 ZNF44 10 43.0 Weakly correlated
52 ZNF789 10 99.0 Highly correlated
53 ZNF394 10 99.0 Highly correlated
54 ZNF436 9 180.0 Weakly correlated
55 ZNF189 9 99.0 Highly correlated
56 ZNF331 9 94.0 Moderately correlated
57 ZNF677 9 99.0 Highly correlated
58 ZNF671 8 94.0 Moderately correlated
59 ZNF440 8 28.9 Weakly correlated
60 ZNF705B 8 28.9 Weakly correlated
61 ZNF597 8 94.0 Moderately correlated
62 ZNF674 8 99.0 Highly correlated
63 ZNF471 7 94.0 Moderately correlated
64 ZNF202 7 160.0 Weakly correlated
65 ZNF468 7 28.9 Weakly correlated
66 ZNF716 7 19.6 Weakly correlated
67 ZNF705D 7 28.9 Weakly correlated
68 ZNF433 6 43.0 Weakly correlated
69 ZNF273 6 28.9 Weakly correlated
70 ZNF707 6 74.0 Weakly correlated
71 ZNF816 6 28.9 Weakly correlated
72 ZNF287 5 99.0 Highly correlated
73 ZNF563 5 28.9 Weakly correlated
74 ZNF695 5 28.9 Weakly correlated
75 ZNF780A 5 43.0 Weakly correlated
76 ZNF282 5 319.0 Weakly correlated
77 ZNF26 4 99.0 Highly correlated
78 ZNF641 4 99.0 Highly correlated
79 ZNF530 4 28.9 Weakly correlated
80 ZNF823 4 43.0 Weakly correlated
81 ZNF675 3 8.6 Weakly correlated
82 ZNF573 3 94.0 Moderately correlated
83 ZNF33B 3 99.0 Highly correlated
84 ZNF350 3 99.0 Highly correlated
85 ZNF483 3 99.0 Highly correlated
86 ZNF879 3 99.0 Highly correlated
87 ZNF169 3 94.0 Moderately correlated
88 ZNF41 3 99.0 Highly correlated
89 ZIK1 2 87.0 Moderately correlated
90 ZNF100 2 28.9 Weakly correlated
91 ZNF136 2 74.0 Weakly correlated
92 ZNF347 2 43.0 Weakly correlated
93 ZNF547 2 74.0 Weakly correlated
94 ZNF667 2 99.0 Highly correlated
95 ZNF417 2 28.9 Weakly correlated
96 ZNF441 2 43.0 Weakly correlated
97 ZNF8 2 99.0 Highly correlated
98 ZNF248 2 99.0 Highly correlated
99 ZNF730 2 19.6 Weakly correlated
100 ZNF425 2 94.0 Moderately correlated
101 ZNF682 2 28.9 Weakly correlated
102 ZNF343 2 74.0 Weakly correlated
103 ZNF525 2 19.6 Weakly correlated
104 ZNF596 2 94.0 Moderately correlated
105 ZNF626 2 0.0 Weakly correlated
106 ZNF10 1 99.0 Highly correlated
107 ZNF12 1 99.0 Highly correlated
108 ZNF132 1 94.0 Moderately correlated
109 ZNF135 1 94.0 Moderately correlated
110 ZNF154 1 94.0 Moderately correlated
111 ZNF157 1 99.0 Highly correlated
112 ZNF561 1 43.0 Weakly correlated
113 ZNF565 1 99.0 Highly correlated
114 ZNF30 1 94.0 Moderately correlated
115 ZNF484 1 99.0 Highly correlated
116 ZNF486 1 8.6 Weakly correlated
117 ZNF567 1 99.0 Highly correlated
118 ZNF568 1 99.0 Highly correlated
119 ZNF75A 1 94.0 Moderately correlated
120 ZNF778 1 74.0 Weakly correlated
121 ZNF93 1 8.6 Weakly correlated
122 ZNF302 1 43.0 Weakly correlated
123 ZNF727 1 19.6 Weakly correlated
124 ZNF777 1 319.0 Weakly correlated
125 ZKSCAN2 1 180.0 Weakly correlated
126 ZNF225 1 74.0 Weakly correlated
127 ZNF33A 1 99.0 Highly correlated
128 ZNF519 1 19.6 Weakly correlated
129 ZNF84 1 99.0 Highly correlated
130 ZNF582 1 99.0 Highly correlated
131 ZNF684 1 99.0 Highly correlated
132 ZNF510 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZKSCAN1 160.0 Weakly correlated
2 ZKSCAN8 160.0 Weakly correlated
3 ZNF175 94.0 Moderately correlated
4 ZNF257 0.0 Weakly correlated
5 ZNF554 99.0 Highly correlated
6 ZNF585B 99.0 Highly correlated
7 ZNF589 28.9 Weakly correlated
8 ZNF671 94.0 Moderately correlated
9 ZNF75D 94.0 Moderately correlated
10 ZNF92 28.9 Weakly correlated