ZRdb KZFP & Repeats
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LTR_MER9A3

  • Name
    MER9A3
  • Repbase
    MER9a3
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000971
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttgggaacaggcccccaaaatctggccataaactggccccaaaactggccataaacaaaatctctgcagcactgtgacatgttcgtgatggccatgacgcccacgctggaaggttgtgggtttaccggaatgagggcaaggaacacctggcccacccagggcggaaaaccgcttaaaggcgttcttaaaccacaaacaatagcatgagcgatctgtgccttaaggacatgctcctgctgcagataactagccagacccatccctttatttcggcccatccctttgtttcccgtaaggaatacttttagttaatctataatctatagaaacaatgcttatcactggcttgctgtcaataaatacgtgggtaaatctctgttcgaggctctcagctctgaaggctgtgagacccctgatttcccactccacacctctatatttctgtgtgtgtgtctttaattcctctagcgccgctgggttagggtctccacgaccgagctggtctcggca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF761 173 19.6 Moderately correlated
2 ZNF816 103 28.9 Highly correlated
3 ZNF28 46 28.9 Highly correlated
4 ZNF320 27 28.9 Highly correlated
5 ZNF417 15 28.9 Highly correlated
6 ZNF317 8 99.0 Weakly correlated
7 ZNF610 8 28.9 Highly correlated
8 ZNF506 8 28.9 Highly correlated
9 ZNF382 7 99.0 Weakly correlated
10 ZNF18 7 160.0 Weakly correlated
11 ZNF587 7 28.9 Highly correlated
12 ZNF92 6 28.9 Highly correlated
13 ZNF140 6 99.0 Weakly correlated
14 ZNF679 5 28.9 Highly correlated
15 ZNF263 4 180.0 Weakly correlated
16 ZNF680 4 28.9 Highly correlated
17 ZNF534 3 19.6 Moderately correlated
18 ZNF793 3 99.0 Weakly correlated
19 ZNF479 3 6.4 Weakly correlated
20 ZNF331 3 94.0 Weakly correlated
21 ZNF2 3 99.0 Weakly correlated
22 ZNF202 3 160.0 Weakly correlated
23 ZNF350 2 99.0 Weakly correlated
24 ZFP69B 2 99.0 Weakly correlated
25 ZNF766 2 43.0 Weakly correlated
26 ZNF136 2 74.0 Weakly correlated
27 ZNF75D 2 94.0 Weakly correlated
28 ZNF682 2 28.9 Highly correlated
29 ZNF141 2 43.0 Weakly correlated
30 ZNF175 2 94.0 Weakly correlated
31 ZNF554 2 99.0 Weakly correlated
32 ZNF549 2 87.0 Weakly correlated
33 ZNF547 2 74.0 Weakly correlated
34 ZNF519 2 19.6 Moderately correlated
35 ZNF251 2 94.0 Weakly correlated
36 ZNF490 2 43.0 Weakly correlated
37 ZNF528 2 43.0 Weakly correlated
38 ZFP57 2 87.0 Weakly correlated
39 ZNF324 1 99.0 Weakly correlated
40 ZFP69 1 99.0 Weakly correlated
41 ZNF808 1 19.6 Moderately correlated
42 ZNF133 1 99.0 Weakly correlated
43 ZNF394 1 99.0 Weakly correlated
44 ZNF765 1 8.6 Weakly correlated
45 ZNF264 1 99.0 Weakly correlated
46 ZNF418 1 43.0 Weakly correlated
47 ZNF723 1 15.2 Moderately correlated
48 ZNF684 1 99.0 Weakly correlated
49 ZNF425 1 94.0 Weakly correlated
50 ZNF44 1 43.0 Weakly correlated
51 ZNF674 1 99.0 Weakly correlated
52 ZNF627 1 74.0 Weakly correlated
53 ZNF182 1 99.0 Weakly correlated
54 ZNF197 1 99.0 Weakly correlated
55 ZNF558 1 99.0 Weakly correlated
56 ZNF485 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF761 171 19.6 Moderately correlated
2 ZNF816 52 28.9 Highly correlated
3 ZNF417 15 28.9 Highly correlated
4 ZNF320 10 28.9 Highly correlated
5 ZNF506 5 28.9 Highly correlated
6 ZNF141 2 43.0 Weakly correlated
7 ZNF793 2 99.0 Weakly correlated
8 ZNF75D 2 94.0 Weakly correlated
9 ZFP69 1 99.0 Weakly correlated
10 ZNF44 1 43.0 Weakly correlated
11 ZNF485 1 94.0 Weakly correlated
12 ZNF674 1 99.0 Weakly correlated
13 ZNF479 1 6.4 Weakly correlated
14 ZNF202 1 160.0 Weakly correlated
15 ZNF331 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF761 19.6 Moderately correlated