ZRdb KZFP & Repeats
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LTR_MER9A2

  • Name
    MER9A2
  • Repbase
    MER9a2
  • Type
    LTR
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0000970
Description :

MER9a2 is a very minor variant of MER9a1. Note that MER stands forMEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttgggaacaggccccccaaaatctggccataaactggccccaaaactggccataaacaaaatctctgcagcactgtgacatgttcatgatggccataacgcccacgctggaaggttgtgggtttaccggaatgagggcaaggaacacctggcccgcccagggcggaaaaccgcttaaaggcattcttaagccacaaacaatagcatgagcgatctgtgccttaaggacatgctcctgctgcagntaactagcccaacccatccctttanttcggcccatcccttcgtttcccataagggatacttttagttaatctaatatctatagaaacaatgctaatgactggcttgctgttaataaatacgtgggtaaatctctgttcggggctctcagctctgaaggctgtgagacccctgatttcccacttcacacctctatatttctgtgtgtgtgtctttaattcctctagcgccgctgggttagggtctccccgaccgagctggtctcggca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF761 81 19.6 Highly correlated
2 ZNF816 63 28.9 Weakly correlated
3 ZNF528 8 43.0 Weakly correlated
4 ZNF679 3 28.9 Weakly correlated
5 ZNF506 3 28.9 Weakly correlated
6 ZNF587 2 28.9 Weakly correlated
7 ZNF417 2 28.9 Weakly correlated
8 ZNF479 2 6.4 Moderately correlated
9 ZNF18 2 160.0 Weakly correlated
10 ZNF92 2 28.9 Weakly correlated
11 ZNF723 1 15.2 Moderately correlated
12 ZNF705D 1 28.9 Weakly correlated
13 ZNF705B 1 28.9 Weakly correlated
14 ZNF485 1 94.0 Weakly correlated
15 ZNF649 1 28.9 Weakly correlated
16 ZNF597 1 94.0 Weakly correlated
17 ZNF534 1 19.6 Highly correlated
18 ZNF486 1 8.6 Moderately correlated
19 ZNF133 1 99.0 Weakly correlated
20 ZNF445 1 99.0 Weakly correlated
21 ZNF394 1 99.0 Weakly correlated
22 ZNF382 1 99.0 Weakly correlated
23 ZNF331 1 94.0 Weakly correlated
24 ZNF324 1 99.0 Weakly correlated
25 ZNF302 1 43.0 Weakly correlated
26 ZNF28 1 28.9 Weakly correlated
27 ZNF284 1 43.0 Weakly correlated
28 ZNF251 1 94.0 Weakly correlated
29 ZNF17 1 69.0 Weakly correlated
30 ZNF157 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF761 79 19.6 Highly correlated
2 ZNF816 31 28.9 Weakly correlated
3 ZNF417 2 28.9 Weakly correlated
4 ZNF18 2 160.0 Weakly correlated
5 ZNF92 1 28.9 Weakly correlated
6 ZNF534 1 19.6 Highly correlated
7 ZNF705D 1 28.9 Weakly correlated
8 ZNF705B 1 28.9 Weakly correlated
9 ZNF506 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF761 19.6 Highly correlated