ZRdb KZFP & Repeats
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LTR_MER9A1

  • Name
    MER9A1
  • Repbase
    MER9a1
  • Type
    LTR
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0000969
Description :

Some copies of MER9a1 appear to have integrated after the split fromorangutan. Note that MER stands for MEdium Reiteration frequencyinterspersed repeat. As such, MERs as a group are a grab bag of DNAtransposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttgggagcaagccccccaaaatctggccataaactggccccaaaactggccataaacaaaatctctgcagcactgtaacatgttcataatggccctaacgcccaagctggaaggttgtgggtttacgggaatgagggcaaggaacacctggcccgcccagggcggaaaaccgcttaaaggcattcttaagccacaaacaatagcatgagcgatctgtgccttaaggacatgctcctgctgcagttaactagcccaacctattcctttaattcggcccatcccttcgtttcccataagggatacttttagttaatttaatatctatagaaacaatgctaatgactggtttgctgttaataaatacgtgggtaaatctctgttcggggctctcagctctgaaggctgtgagacccctgatttcccacttcacacctctatatttctgtgtgtgtgtctttaattcctctagcgccgctgggttagggtctccccgaccgagctggtctcggca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF761 90 19.6 Highly correlated
2 ZNF816 44 28.9 Weakly correlated
3 ZNF18 12 160.0 Weakly correlated
4 ZNF417 6 28.9 Weakly correlated
5 ZNF680 4 28.9 Weakly correlated
6 ZNF679 4 28.9 Weakly correlated
7 ZNF506 3 28.9 Weakly correlated
8 ZNF75D 3 94.0 Weakly correlated
9 ZNF394 3 99.0 Weakly correlated
10 ZNF705B 2 28.9 Weakly correlated
11 ZNF528 2 43.0 Weakly correlated
12 ZNF534 2 19.6 Highly correlated
13 ZNF587 2 28.9 Weakly correlated
14 ZFP69B 2 99.0 Weakly correlated
15 ZNF766 2 43.0 Weakly correlated
16 ZNF793 2 99.0 Weakly correlated
17 ZNF92 2 28.9 Weakly correlated
18 ZNF486 2 8.6 Moderately correlated
19 ZFP37 2 99.0 Weakly correlated
20 ZKSCAN8 2 160.0 Weakly correlated
21 ZNF479 2 6.4 Moderately correlated
22 ZNF382 2 99.0 Weakly correlated
23 ZNF28 2 28.9 Weakly correlated
24 ZNF93 1 8.6 Moderately correlated
25 ZNF510 1 99.0 Weakly correlated
26 ZNF101 1 43.0 Weakly correlated
27 ZNF777 1 319.0 Weakly correlated
28 ZNF140 1 99.0 Weakly correlated
29 ZNF251 1 94.0 Weakly correlated
30 ZNF705D 1 28.9 Weakly correlated
31 ZNF324 1 99.0 Weakly correlated
32 ZNF701 1 28.9 Weakly correlated
33 ZNF589 1 28.9 Weakly correlated
34 ZNF485 1 94.0 Weakly correlated
35 ZNF584 1 99.0 Weakly correlated
36 ZNF560 1 43.0 Weakly correlated
37 ZNF549 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF761 87 19.6 Highly correlated
2 ZNF816 22 28.9 Weakly correlated
3 ZNF417 5 28.9 Weakly correlated
4 ZNF18 4 160.0 Weakly correlated
5 ZNF680 3 28.9 Weakly correlated
6 ZNF534 2 19.6 Highly correlated
7 ZNF92 2 28.9 Weakly correlated
8 ZNF28 2 28.9 Weakly correlated
9 ZNF506 2 28.9 Weakly correlated
10 ZNF75D 2 94.0 Weakly correlated
11 ZNF251 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF761 19.6 Highly correlated