ZRdb KZFP & Repeats
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LTR_MER92B

  • Name
    MER92B
  • Repbase
    MER92B
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000955
Description :

MER92B has 4 bp TSDs, and is distantly related to MER67D. Note that MERstands for MEdium Reiteration frequency interspersed repeat. As such,MERs as a group are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgacaatgttgaactttacctgagccctgtgntcctggaaaacagcganggttaagaaatccccccacccttttgtgttccgggaaacggcttactgcaaagaaccacccttccccatatgacttagataagactcacggatgncccccttgtttacctatgacaaggccagacacagaccctccaaattcccattctttgcctcataaatgattagctgaactgtttgtccccactgatcaatcggaacaaaatgcttgttaacncgncttgaccaaactttggttaagcttctctccttcccccaggcccctgaactttggcccaccctcagcctgagccagcatcanaatntnnaacagcccctcctgagaataggctggcctcagggtaaaacattctctgatctactctgatcncgccaccctttcatcccacttccccacacccggttctttctagccttgtttactcctccctataaaagaaaagccctttctgcctaacctttgagacgcttgcagatcttatggtcggagcgttctccctattgcaatagtccccctccccccnttgcaataatcctttcgaataaagtctctccttacctaagtccggatttgtttttatttgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF169 22 94.0 Moderately correlated
2 ZNF382 21 99.0 Highly correlated
3 ZNF766 16 43.0 Weakly correlated
4 ZNF680 11 28.9 Weakly correlated
5 ZNF18 8 160.0 Weakly correlated
6 ZNF394 7 99.0 Highly correlated
7 ZNF589 7 28.9 Weakly correlated
8 ZNF263 7 180.0 Weakly correlated
9 ZNF175 7 94.0 Moderately correlated
10 ZNF534 7 19.6 Weakly correlated
11 ZNF251 7 94.0 Moderately correlated
12 ZNF679 6 28.9 Weakly correlated
13 ZNF257 5 0.0 Weakly correlated
14 ZFP37 4 99.0 Highly correlated
15 ZNF682 4 28.9 Weakly correlated
16 ZNF554 3 99.0 Highly correlated
17 ZNF707 3 74.0 Weakly correlated
18 ZNF468 3 28.9 Weakly correlated
19 ZNF705B 3 28.9 Weakly correlated
20 ZNF75D 3 94.0 Moderately correlated
21 ZNF701 3 28.9 Weakly correlated
22 ZNF324 3 99.0 Highly correlated
23 ZFP69B 3 99.0 Highly correlated
24 ZNF2 3 99.0 Highly correlated
25 ZNF28 3 28.9 Weakly correlated
26 ZKSCAN8 3 160.0 Weakly correlated
27 ZNF793 3 99.0 Highly correlated
28 ZNF197 3 99.0 Highly correlated
29 ZNF317 2 99.0 Highly correlated
30 ZNF816 2 28.9 Weakly correlated
31 ZKSCAN1 2 160.0 Weakly correlated
32 ZNF610 2 28.9 Weakly correlated
33 ZNF597 2 94.0 Moderately correlated
34 ZNF101 2 43.0 Weakly correlated
35 ZNF585B 2 99.0 Highly correlated
36 ZNF584 2 99.0 Highly correlated
37 ZNF558 2 99.0 Highly correlated
38 ZNF133 2 99.0 Highly correlated
39 ZNF528 2 43.0 Weakly correlated
40 ZNF441 2 43.0 Weakly correlated
41 ZNF282 2 319.0 Weakly correlated
42 ZNF320 2 28.9 Weakly correlated
43 ZNF808 1 19.6 Weakly correlated
44 ZNF723 1 15.2 Weakly correlated
45 ZNF728 1 19.6 Weakly correlated
46 ZNF778 1 74.0 Weakly correlated
47 ZNF823 1 43.0 Weakly correlated
48 ZNF695 1 28.9 Weakly correlated
49 ZNF641 1 99.0 Highly correlated
50 ZNF586 1 43.0 Weakly correlated
51 ZNF486 1 8.6 Weakly correlated
52 ZNF479 1 6.4 Weakly correlated
53 ZNF354A 1 99.0 Highly correlated
54 ZNF347 1 43.0 Weakly correlated
55 ZNF284 1 43.0 Weakly correlated
56 ZNF274 1 99.0 Highly correlated
57 ZNF124 1 43.0 Weakly correlated
58 ZIM3 1 87.0 Moderately correlated
59 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF589 3 28.9 Weakly correlated
2 ZNF766 3 43.0 Weakly correlated
3 ZNF534 3 19.6 Weakly correlated
4 ZNF528 2 43.0 Weakly correlated
5 ZNF317 2 99.0 Highly correlated
6 ZNF680 2 28.9 Weakly correlated
7 ZNF18 2 160.0 Weakly correlated
8 ZNF679 2 28.9 Weakly correlated
9 ZNF257 2 0.0 Weakly correlated
10 ZNF468 2 28.9 Weakly correlated
11 ZNF75D 1 94.0 Moderately correlated
12 ZNF263 1 180.0 Weakly correlated
13 ZNF816 1 28.9 Weakly correlated
14 ZNF793 1 99.0 Highly correlated
15 ZNF707 1 74.0 Weakly correlated
16 ZNF554 1 99.0 Highly correlated
17 ZNF701 1 28.9 Weakly correlated
18 ZNF197 1 99.0 Highly correlated
19 ZNF124 1 43.0 Weakly correlated
20 ZNF175 1 94.0 Moderately correlated
21 ZNF695 1 28.9 Weakly correlated
22 ZNF282 1 319.0 Weakly correlated
23 ZNF584 1 99.0 Highly correlated
24 ZNF382 1 99.0 Highly correlated
25 ZNF320 1 28.9 Weakly correlated
26 ZNF101 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats