ZRdb KZFP & Repeats
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LTR_MER92-INT

  • Name
    MER92-INT
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000958
Description :

MER92-int is similar to LTR37-int. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gttttggtgccgtgactcggatagatcggacctcgccttcggatccccgtttactccacccaggtaacgaggcctctcggagccctttgtgctccgttcctgactggcgatccggggacccaacggtgagtccgactcctggtcctgtgctccggactcttgtccatcggtagcgcggtaaggatttgattttgattctttttgagtactcgcttgatttctggtgccggcttcttttggttttatggtctgaccatttggtgatctctgtaaatggattaatggtttatagagatcttgtctctgttgggtgagagacgacagagaatctggtttgttagtcttttctgtttgtctatttgtctattttgagctcaaatcaattaagaatttcgtgcccaccgggaagagaacagctctttgatatggaccggtgagttttgtatttctgtgtttacgcttgacccatggctgaaattttagaattgaagctataagctctctgtctntctctgtctgtatgtttatatgtctgtaattcagaaaggcctttacctctcattgtgtgagtgtgtaatattttcctacctccggatggtattancaaattagattataaaatctcttaaaggagctctattctgattggcttagagataaataagcgcttatataaattgaatattcctaaaattcccagaaattaaggaaattgaacttctaatactttcaatgtggacaaaaaaaggtattcttatagaaactaactcagaaatgttttaagaattcaagttcacataatttaggtaaatctttggcaaacgagactagtttaatatttttggtttaataaaaacagctatgtcttctctganttatcagtgttaagtataatacaagcgtacatttttattctacttgggtatgttcttcctaaacttatacaggtttactgatcgaataagctagcattacttctactnaatgtttaagattatgaaaaatgtaaatttgtgtttaaccaaattgaatcattattctgacaaactttatttcaacagtaattatgttttgtagtatgtcagcttgaagatagtttccaagatctttnggtaacttaaaaccttggactgatactaaattgagttaattaatggatattcattagatacctagatcatttctaagtaagatagaatactgaaacattaattactaagcataattttaagtttatatacttttgcttcttatttttatatgntacagagaggctatatatttgggtctgttaatgaacgtgttcatttttgccacnttgagaagttgtactataagggatgcgtatggctatagaaagttgtgagatgtatattcataagctttgctagtctgctacaaaatgctggtgtgtgacagacagttcacaattatccacttcctagttttctctgtgaaatagaagttactntggttaaaagttataatcaatatatgtaaatgagactntactaggagcaatagtggcaaagagaaacaactttgtatgcaaagtatgcaggatgtgtttttgttaaggaaaaaagagtagttttgtcctaaagtaaaatgactggttgttccagaatgagaaagaggaaagtgtaggacaaaacctgaatggatatagaaagttgtagaaggttcgcggaaaaggaattttatttgccgtggtcaaagctggctaaggtttgatgggtttatttataagattttcaaaaagagctttagtatcaaatattatactgatgcaaaactagaatttggttttctctctgttaaaatgacaaagttttcttggattattggtctgctcttaataagagattgtaaaaggttnttctttaccttctgngtaatctgcctagaaagcaaagattctgtgtcttatcagaataatttcctgtgctttatgttgactttatcatgtccttgattatttaagaaaacaaagtcttctcacttntgaaagagctaaggttctttacaatcatgttacctcctatgtttacttttaaaatnttttattgtcactttggttaaataggtagccaagtattgtttctcagtnacccatgatcctatcttaatcaagtgttcaaatctcctgacaacttttgatattttgccttcccaaaatcgaatcctaaatgatatcttttgcacctaaaactgtctttgagatttcccagagggcccctggaaaatcacaaaggatttgttctttcaccttgtaaaaagagaggtgctagaaataattaggtttatttgatatgttactattgatgagttgcatgggaagcgttgtcaaatcagaagagatgcttagccttccctaggttaaatttgtatgggtaaaatgttattaatataaatatttcagaaattgtatgctntatgggaagttcctagagatttgtcaatgccctcgctgtccatgatatgtttctatttatcagagtcctggtgctgctttgcctgatattagacaacagtatagtgttatcagtcataatttcagttattttttaaaatgttaacttggtcacaactttacttctttaatttgaatctagcatcttctaggccagtggttttcaactggggattcacatcacttacctatggagttttattaatatacagatgtttaggacctactccagacttactgaatctctttacttgatattcttgatatattcttggtatattctaactatatgcttggtatattcatggtatattatgtctcaggattattatatgttatatctgaagatttttttctctgtaaagattatgttcatccatttttataaattagatgtaatattcactcttctttgaaaataggnttaatcattatgtttatagatattttgtctaaaacttttttggattgactttattatcttgttttgcatgccacagaaacaaccaaatttccttgtcagttgcattattcttgtaatgaactctcatcagatctttcacttttgaaaattatcagtaataagttaaccacagccattttaagtcttttgtcatctacagatagtttttgttttactctgatgcttccctgaaagcncttgcaantcagctacaggccagagtgcttcgtcttcaacaaaggactgtctcagagncccgcggaaaaggactatgccaggtactcttgggtacaggcttctgatggcatcgcttaaacaactttgagaccataccagtggactgagtcaggatttccagaactctagtcgagaagcngatgggttcatgagactgctaacccaagatcnagcggaacaagaattaattacataggactgaatgaactgatgagggatgattatggnttttgtttggaatattgctgatgttttaatgttctattttctggatatataaggaanccctttctcttttctcttaagctatctataactcataacaatttagtagactatgcttttgtaaacagaaatgaaacatttntaaatgatatctttttctccctgcctgacccctccagaattcggaaactcttttgagtattcttattttcatggcaatatagttatttgcataggttcaataagaatctgtcctccttgttaacaggacataattggaaacattggttatacaaccaaggccttgnctggaatgtcatatttgagaatgatgctcatttaatcagatatgaccagacacttttaaggaactaaggttgactttatggagccaatgcttacaaagccctctcgggaaaaccggcctggtancctggcttacagggttcccagccttacaggtgagtaaggaaggtcacttcctggcaggcccaggaaccttaggatattttggggacctcgagaagagaggaattcacccaaatctataggtactgcaggtgaaatctggtggcgagttcttggcttggcttcctagcctcaagaggcttttaaaagtccaatctgagattccttatgaaaacttccagcaaagcaaacttaagaaggcctatgtggtaaattaccattcttgctgcacctatgtaaataatcaggccaaatctaatgagaccagccttattttgtgatcaagaataatctttctttgagattatttttgatcaaaaggggggtgactacagagagaaattttatgtttcaanggaaaactatncgncgnnnnnagcgcnccnttgtgagttatcagattctagtcttgtttcttgtttctgggctattttntacctctttgtaaactgcaggtaactgatggatatgcaaactncgtcttgtctggtagagatntaattgacttcctcccccnctgtggaaaaancagttttggtacctacctgtaaattggactggatcctgttaccttgcncaaattgtcaatccttaccaaattttcaattcttccagtttccttcaatatctggctacaaccctccaaactaacgtttccaatttttctccctcccgcctgactcggcgtcaccgagaactaaaacctgactgcccagatccctatcgggactctaggttgccttgcagctggcccttttccccaggatctgaagaagccctgcgagctgaagcccgacgacttgatataaacctcgaaggactcaccaccgcagcagaccatgcatgggccggatttctccctggacaagccgctgtctgggccactaaggaagtccggcgaaatgctcgggtcatgcatgcccttatatgagaggtaaccaagactgtggacatcaccaagagcatcgacatcctagcttcaagaaactcaacgagcggtgctgcataaccgaaagattttcctccaccgacctcttggaatccgctggactggttaccctcagggttcaactcctggctctttactttaatacaaccttttatattaatatttctctttttcattttaggcatccctcttttaagatgcctgatctccaggaccctaaaacaactgacctttgccaccacctctcaacagatggttcaactggttttacaggaacaacgccaacaagagtcctcgagagactatttcttagaccctgcttcgccccactcaggaggtttatgatcgcctctgagttgttcagcgacgaatgatattcatcgtcttgaaaaagaggggagac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 13 28.9 Weakly correlated
2 ZNF382 9 99.0 Highly correlated
3 ZNF394 8 99.0 Highly correlated
4 ZNF679 6 28.9 Weakly correlated
5 ZNF528 6 43.0 Weakly correlated
6 ZNF723 4 15.2 Weakly correlated
7 ZNF263 4 180.0 Weakly correlated
8 ZNF766 4 43.0 Weakly correlated
9 ZNF705B 3 28.9 Weakly correlated
10 ZNF251 3 94.0 Moderately correlated
11 ZNF429 2 28.9 Weakly correlated
12 ZNF705D 2 28.9 Weakly correlated
13 ZNF75D 2 94.0 Moderately correlated
14 ZNF682 2 28.9 Weakly correlated
15 ZNF558 2 99.0 Highly correlated
16 ZNF786 2 99.0 Highly correlated
17 ZNF320 2 28.9 Weakly correlated
18 ZNF317 2 99.0 Highly correlated
19 ZNF169 2 94.0 Moderately correlated
20 ZNF101 2 43.0 Weakly correlated
21 ZIM3 2 87.0 Moderately correlated
22 ZNF780A 1 43.0 Weakly correlated
23 ZNF92 1 28.9 Weakly correlated
24 ZNF793 1 99.0 Highly correlated
25 ZFP57 1 87.0 Moderately correlated
26 ZNF701 1 28.9 Weakly correlated
27 ZNF506 1 28.9 Weakly correlated
28 ZNF479 1 6.4 Weakly correlated
29 ZNF441 1 43.0 Weakly correlated
30 ZNF28 1 28.9 Weakly correlated
31 ZNF26 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF528 4 43.0 Weakly correlated
2 ZNF680 4 28.9 Weakly correlated
3 ZNF723 2 15.2 Weakly correlated
4 ZNF766 2 43.0 Weakly correlated
5 ZNF101 1 43.0 Weakly correlated
6 ZNF263 1 180.0 Weakly correlated
7 ZNF793 1 99.0 Highly correlated
8 ZNF317 1 99.0 Highly correlated
9 ZNF701 1 28.9 Weakly correlated
10 ZNF382 1 99.0 Highly correlated
11 ZNF479 1 6.4 Weakly correlated
12 ZNF75D 1 94.0 Moderately correlated
13 ZNF705D 1 28.9 Weakly correlated
14 ZNF705B 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats