ZRdb KZFP & Repeats
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LTR_MER90A

  • Name
    MER90A
  • Repbase
    MER90a_LTR
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000950
Description :

MER90a has 4 bp TSDs. Note that MER stands for MEdium Reiterationfrequency interspersed repeat. As such, MERs as a group are a grab bagof DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagaaagagaaaagcagcccctgacatccgggagctggcctggcactatcagctaggccttggtgttgctaggagctggcctggcactcacagctaggccttggtgttctcctgttgaacataaacaatttcacagaacaccaacatcagacaaggccactctgtgaccatgatggatcaagacaaaaacaagaccactccgtaatcatgtctgaacacagacaaaacatgaacattgtccaaaccacaaaaatgaccaaacatccccctntcctggctaatatgagtgactgctgcttctttaccaattacagctttagcctcgctctagtcttccctccttctagataagatttattaagatacccaatcatagaattacccccgcttcctgacagcatccaatccagagcaaagccccgcttccttaaaccctcccccaaatcacctaacacaagcccaaatcctataataagtcctttctaacaccctcttactgagacgccccacggttccccatggtgtgcgttctccctcgctgcaacgagcaataaacccaacttgttcaactacaggtgtgttcctggtggtctttggctggagggcattgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 57 99.0 Highly correlated
2 ZNF766 35 43.0 Weakly correlated
3 ZNF263 26 180.0 Weakly correlated
4 ZNF589 18 28.9 Weakly correlated
5 ZNF680 17 28.9 Weakly correlated
6 ZNF317 14 99.0 Highly correlated
7 ZNF394 13 99.0 Highly correlated
8 ZFP37 11 99.0 Highly correlated
9 ZNF197 11 99.0 Highly correlated
10 ZNF175 11 94.0 Moderately correlated
11 ZNF584 11 99.0 Highly correlated
12 ZNF18 9 160.0 Weakly correlated
13 ZIM3 9 87.0 Moderately correlated
14 ZNF597 9 94.0 Moderately correlated
15 ZNF479 8 6.4 Weakly correlated
16 ZNF2 8 99.0 Highly correlated
17 ZKSCAN1 8 160.0 Weakly correlated
18 ZKSCAN8 8 160.0 Weakly correlated
19 ZNF320 7 28.9 Weakly correlated
20 ZNF679 7 28.9 Weakly correlated
21 ZNF534 6 19.6 Weakly correlated
22 ZNF558 6 99.0 Highly correlated
23 ZNF701 6 28.9 Weakly correlated
24 ZNF723 5 15.2 Weakly correlated
25 ZNF705B 5 28.9 Weakly correlated
26 ZNF28 5 28.9 Weakly correlated
27 ZNF92 5 28.9 Weakly correlated
28 ZFP69B 5 99.0 Highly correlated
29 ZNF610 4 28.9 Weakly correlated
30 ZNF528 4 43.0 Weakly correlated
31 ZNF33A 4 99.0 Highly correlated
32 ZNF75D 4 94.0 Moderately correlated
33 ZNF101 4 43.0 Weakly correlated
34 ZNF674 3 99.0 Highly correlated
35 ZNF41 3 99.0 Highly correlated
36 ZNF182 3 99.0 Highly correlated
37 ZNF585A 3 99.0 Highly correlated
38 ZNF879 3 99.0 Highly correlated
39 ZNF133 3 99.0 Highly correlated
40 ZNF486 3 8.6 Weakly correlated
41 ZNF695 2 28.9 Weakly correlated
42 ZNF705D 2 28.9 Weakly correlated
43 ZNF735 2 28.9 Weakly correlated
44 ZNF793 2 99.0 Highly correlated
45 ZNF573 2 94.0 Moderately correlated
46 ZNF554 2 99.0 Highly correlated
47 ZFP57 2 87.0 Moderately correlated
48 ZNF324 2 99.0 Highly correlated
49 ZNF140 2 99.0 Highly correlated
50 ZNF141 2 43.0 Weakly correlated
51 ZNF169 2 94.0 Moderately correlated
52 ZNF26 2 99.0 Highly correlated
53 ZNF441 2 43.0 Weakly correlated
54 ZNF490 2 43.0 Weakly correlated
55 ZNF468 2 28.9 Weakly correlated
56 ZNF506 1 28.9 Weakly correlated
57 ZNF845 1 28.9 Weakly correlated
58 ZNF485 1 94.0 Moderately correlated
59 ZNF792 1 94.0 Moderately correlated
60 ZNF778 1 74.0 Weakly correlated
61 ZNF19 1 99.0 Highly correlated
62 ZNF202 1 160.0 Weakly correlated
63 ZNF251 1 94.0 Moderately correlated
64 ZNF257 1 0.0 Weakly correlated
65 ZNF264 1 99.0 Highly correlated
66 ZNF274 1 99.0 Highly correlated
67 ZNF284 1 43.0 Weakly correlated
68 ZNF519 1 19.6 Weakly correlated
69 ZNF334 1 99.0 Highly correlated
70 ZNF677 1 99.0 Highly correlated
71 ZNF337 1 43.0 Weakly correlated
72 ZNF671 1 94.0 Moderately correlated
73 ZNF350 1 99.0 Highly correlated
74 ZNF425 1 94.0 Moderately correlated
75 ZNF429 1 28.9 Weakly correlated
76 ZNF440 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 7 180.0 Weakly correlated
2 ZNF479 6 6.4 Weakly correlated
3 ZIM3 5 87.0 Moderately correlated
4 ZNF197 5 99.0 Highly correlated
5 ZNF584 5 99.0 Highly correlated
6 ZNF589 5 28.9 Weakly correlated
7 ZNF534 4 19.6 Weakly correlated
8 ZNF680 3 28.9 Weakly correlated
9 ZNF766 3 43.0 Weakly correlated
10 ZNF28 3 28.9 Weakly correlated
11 ZNF75D 2 94.0 Moderately correlated
12 ZNF382 2 99.0 Highly correlated
13 ZNF468 2 28.9 Weakly correlated
14 ZNF26 2 99.0 Highly correlated
15 ZNF169 2 94.0 Moderately correlated
16 ZNF317 2 99.0 Highly correlated
17 ZNF701 2 28.9 Weakly correlated
18 ZNF141 2 43.0 Weakly correlated
19 ZNF2 2 99.0 Highly correlated
20 ZNF723 1 15.2 Weakly correlated
21 ZFP57 1 87.0 Moderately correlated
22 ZNF101 1 43.0 Weakly correlated
23 ZNF585A 1 99.0 Highly correlated
24 ZNF573 1 94.0 Moderately correlated
25 ZNF490 1 43.0 Weakly correlated
26 ZNF133 1 99.0 Highly correlated
27 ZNF140 1 99.0 Highly correlated
28 ZNF320 1 28.9 Weakly correlated
29 ZNF202 1 160.0 Weakly correlated
30 ZNF41 1 99.0 Highly correlated
31 ZNF677 1 99.0 Highly correlated
32 ZNF394 1 99.0 Highly correlated
33 ZNF597 1 94.0 Moderately correlated
34 ZNF558 1 99.0 Highly correlated
35 ZNF793 1 99.0 Highly correlated
36 ZNF735 1 28.9 Weakly correlated
37 ZNF528 1 43.0 Weakly correlated
38 ZNF175 1 94.0 Moderately correlated
39 ZNF440 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF479 6.4 Weakly correlated