ZRdb KZFP & Repeats
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LTR_MER90

  • Name
    MER90
  • Repbase
    MER90
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000949
Description :

MER90 has 4 bp TSDs. In some elements, the 40 bp tandem repeat fromroughly pos. 29-109, occurs only once. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagaaagagaaaagcagcccctgacatgccgggagctggcctggcactcacagctaggccntggtgttctcctgttgaacataaacaatttcacagaacaccaacatcagacaaggccactctgtgaccatgatggancgagacaaaaacaagaccactccgtaatcatgtctgagcacagacaaaaacangaacactgtccaaaccacaaaaatgaccaaacatccccctctcccggctaatatgagtgactgctgcttctttaccaattacagctttagcctcgctctagtcttccctccttctagataagatttattaagatacccaatcatagaattgcccccgcttcctgacagcatccaatccagagcaaagccccgcttccttaaaccctcccccaaatcacccaacacaagcccaaatcctataataagtcctttctaacaccctcttactgagacgccccatggttccccatggtgtgcgttctccctcgctgcaacgagtaataaacccaacttgttcaactacaggtgtgttcctggtggtctttggctggagggcattgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 27 43.0 Weakly correlated
2 ZNF382 26 99.0 Highly correlated
3 ZNF263 17 180.0 Weakly correlated
4 ZNF589 15 28.9 Weakly correlated
5 ZNF394 10 99.0 Highly correlated
6 ZKSCAN1 10 160.0 Weakly correlated
7 ZNF2 10 99.0 Highly correlated
8 ZNF197 10 99.0 Highly correlated
9 ZNF18 9 160.0 Weakly correlated
10 ZNF175 9 94.0 Moderately correlated
11 ZFP37 9 99.0 Highly correlated
12 ZNF317 8 99.0 Highly correlated
13 ZNF479 8 6.4 Weakly correlated
14 ZNF101 7 43.0 Weakly correlated
15 ZNF680 7 28.9 Weakly correlated
16 ZKSCAN8 6 160.0 Weakly correlated
17 ZFP69B 6 99.0 Highly correlated
18 ZNF534 5 19.6 Weakly correlated
19 ZNF584 5 99.0 Highly correlated
20 ZNF324 4 99.0 Highly correlated
21 ZNF610 4 28.9 Weakly correlated
22 ZNF251 4 94.0 Moderately correlated
23 ZNF585B 4 99.0 Highly correlated
24 ZNF705B 3 28.9 Weakly correlated
25 ZNF554 2 99.0 Highly correlated
26 ZNF558 2 99.0 Highly correlated
27 ZNF701 2 28.9 Weakly correlated
28 ZNF331 2 94.0 Moderately correlated
29 ZNF26 2 99.0 Highly correlated
30 ZNF264 2 99.0 Highly correlated
31 ZNF792 2 94.0 Moderately correlated
32 ZIM3 2 87.0 Moderately correlated
33 ZFP57 2 87.0 Moderately correlated
34 ZNF695 1 28.9 Weakly correlated
35 ZNF705D 1 28.9 Weakly correlated
36 ZNF707 1 74.0 Weakly correlated
37 ZNF641 1 99.0 Highly correlated
38 ZNF597 1 94.0 Moderately correlated
39 ZNF786 1 99.0 Highly correlated
40 ZNF793 1 99.0 Highly correlated
41 ZNF585A 1 99.0 Highly correlated
42 ZNF92 1 28.9 Weakly correlated
43 ZNF37A 1 99.0 Highly correlated
44 ZFP69 1 99.0 Highly correlated
45 ZNF189 1 99.0 Highly correlated
46 ZNF202 1 160.0 Weakly correlated
47 ZNF222 1 43.0 Weakly correlated
48 ZNF257 1 0.0 Weakly correlated
49 ZNF284 1 43.0 Weakly correlated
50 ZNF28 1 28.9 Weakly correlated
51 ZNF343 1 74.0 Weakly correlated
52 ZNF350 1 99.0 Highly correlated
53 ZNF573 1 94.0 Moderately correlated
54 ZNF425 1 94.0 Moderately correlated
55 ZNF429 1 28.9 Weakly correlated
56 ZNF440 1 28.9 Weakly correlated
57 ZNF486 1 8.6 Weakly correlated
58 ZNF506 1 28.9 Weakly correlated
59 ZNF519 1 19.6 Weakly correlated
60 ZNF547 1 74.0 Weakly correlated
61 ZNF549 1 87.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 4 6.4 Weakly correlated
2 ZNF382 4 99.0 Highly correlated
3 ZNF197 3 99.0 Highly correlated
4 ZNF766 3 43.0 Weakly correlated
5 ZNF534 3 19.6 Weakly correlated
6 ZNF2 2 99.0 Highly correlated
7 ZNF589 2 28.9 Weakly correlated
8 ZNF573 1 94.0 Moderately correlated
9 ZNF680 1 28.9 Weakly correlated
10 ZNF37A 1 99.0 Highly correlated
11 ZNF793 1 99.0 Highly correlated
12 ZNF18 1 160.0 Weakly correlated
13 ZNF26 1 99.0 Highly correlated
14 ZNF263 1 180.0 Weakly correlated
15 ZNF584 1 99.0 Highly correlated
16 ZFP37 1 99.0 Highly correlated
17 ZNF343 1 74.0 Weakly correlated
18 ZNF585B 1 99.0 Highly correlated
19 ZNF440 1 28.9 Weakly correlated
20 ZNF257 1 0.0 Weakly correlated
21 ZNF317 1 99.0 Highly correlated
22 ZNF707 1 74.0 Weakly correlated
23 ZNF695 1 28.9 Weakly correlated
24 ZIM3 1 87.0 Moderately correlated
25 ZFP69 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats