ZRdb KZFP & Repeats
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LTR_MER89

  • Name
    MER89
  • Repbase
    MER89
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000947
Description :

MER89 has 4 bp TSDs, and is highly diverged from other known LTRs. Notethat MER stands for MEdium Reiteration frequency interspersed repeat. Assuch, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagagactgaatatacaaacggacaatggccagaccatatataaaaatagaactctgacccacaacctctgcagcaaccagcccaggaaaccaanccccttatctacaataacaaccaggaagccagcctgctgtaagtcagacttgcaggaagtcagaccgctatctctagcaaccagtccaggaagccaaacaacaacctctgtagcaatcggcccnaaatggccaggacttgattaataactgacagcttccctaatttttgtccccgcttccaacttaggaccaaccagagaaagccaaatatgcncccctaaccaatcacataggatgccccgcttctagttagcccgcctncagcttccccatgccaacagcctccaatcagggcacacctgaagccttcccttttttccactataaagctttcccactcctctgcctgcctttgagtctctgccaaacgcaagtgatggtggctgactcccttgctatagcaagctctgaataaatagcctttgcttgttctcatttgggtggtcttcgtttatttccaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF792 88 94.0 Moderately correlated
2 ZNF33A 88 99.0 Highly correlated
3 ZNF41 82 99.0 Highly correlated
4 ZNF382 59 99.0 Highly correlated
5 ZNF766 46 43.0 Weakly correlated
6 ZNF175 32 94.0 Moderately correlated
7 ZNF589 30 28.9 Weakly correlated
8 ZNF394 25 99.0 Highly correlated
9 ZFP37 23 99.0 Highly correlated
10 ZKSCAN8 20 160.0 Weakly correlated
11 ZNF584 18 99.0 Highly correlated
12 ZNF169 16 94.0 Moderately correlated
13 ZIM3 15 87.0 Moderately correlated
14 ZNF2 15 99.0 Highly correlated
15 ZNF263 15 180.0 Weakly correlated
16 ZNF101 13 43.0 Weakly correlated
17 ZNF317 12 99.0 Highly correlated
18 ZNF18 12 160.0 Weakly correlated
19 ZNF197 12 99.0 Highly correlated
20 ZNF75D 8 94.0 Moderately correlated
21 ZNF534 8 19.6 Weakly correlated
22 ZNF324 8 99.0 Highly correlated
23 ZNF680 8 28.9 Weakly correlated
24 ZNF257 7 0.0 Weakly correlated
25 ZNF610 7 28.9 Weakly correlated
26 ZKSCAN1 7 160.0 Weakly correlated
27 ZFP69B 7 99.0 Highly correlated
28 ZNF479 6 6.4 Weakly correlated
29 ZNF679 6 28.9 Weakly correlated
30 ZNF549 5 87.0 Moderately correlated
31 ZNF519 5 19.6 Weakly correlated
32 ZNF554 5 99.0 Highly correlated
33 ZNF28 5 28.9 Weakly correlated
34 ZNF701 5 28.9 Weakly correlated
35 ZNF723 5 15.2 Weakly correlated
36 ZNF705B 4 28.9 Weakly correlated
37 ZNF793 4 99.0 Highly correlated
38 ZNF264 3 99.0 Highly correlated
39 ZNF558 3 99.0 Highly correlated
40 ZNF141 3 43.0 Weakly correlated
41 ZNF597 3 94.0 Moderately correlated
42 ZNF429 3 28.9 Weakly correlated
43 ZNF26 3 99.0 Highly correlated
44 ZNF707 3 74.0 Weakly correlated
45 ZNF682 2 28.9 Weakly correlated
46 ZNF823 2 43.0 Weakly correlated
47 ZNF8 2 99.0 Highly correlated
48 ZNF92 2 28.9 Weakly correlated
49 ZNF93 2 8.6 Weakly correlated
50 ZNF282 2 319.0 Weakly correlated
51 ZFP57 2 87.0 Moderately correlated
52 ZNF140 2 99.0 Highly correlated
53 ZNF274 2 99.0 Highly correlated
54 ZNF284 2 43.0 Weakly correlated
55 ZNF331 2 94.0 Moderately correlated
56 ZNF347 2 43.0 Weakly correlated
57 ZNF485 2 94.0 Moderately correlated
58 ZNF528 2 43.0 Weakly correlated
59 ZNF251 1 94.0 Moderately correlated
60 ZFP69 1 99.0 Highly correlated
61 ZNF91 1 6.0 Weakly correlated
62 ZNF124 1 43.0 Weakly correlated
63 ZNF84 1 99.0 Highly correlated
64 ZNF136 1 74.0 Weakly correlated
65 ZNF557 1 15.2 Weakly correlated
66 ZNF17 1 69.0 Weakly correlated
67 ZNF786 1 99.0 Highly correlated
68 ZNF778 1 74.0 Weakly correlated
69 ZNF182 1 99.0 Highly correlated
70 ZNF486 1 8.6 Weakly correlated
71 ZNF735 1 28.9 Weakly correlated
72 ZNF273 1 28.9 Weakly correlated
73 ZNF510 1 99.0 Highly correlated
74 ZNF544 1 0.0 Weakly correlated
75 ZNF583 1 99.0 Highly correlated
76 ZNF506 1 28.9 Weakly correlated
77 ZNF681 1 28.9 Weakly correlated
78 ZNF337 1 43.0 Weakly correlated
79 ZNF585A 1 99.0 Highly correlated
80 ZNF674 1 99.0 Highly correlated
81 ZNF350 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF33A 48 99.0 Highly correlated
2 ZNF792 16 94.0 Moderately correlated
3 ZIM3 10 87.0 Moderately correlated
4 ZNF175 10 94.0 Moderately correlated
5 ZNF589 9 28.9 Weakly correlated
6 ZNF75D 6 94.0 Moderately correlated
7 ZNF534 5 19.6 Weakly correlated
8 ZNF197 5 99.0 Highly correlated
9 ZNF584 5 99.0 Highly correlated
10 ZNF766 5 43.0 Weakly correlated
11 ZNF28 5 28.9 Weakly correlated
12 ZNF479 4 6.4 Weakly correlated
13 ZNF101 4 43.0 Weakly correlated
14 ZNF382 3 99.0 Highly correlated
15 ZKSCAN8 3 160.0 Weakly correlated
16 ZNF554 3 99.0 Highly correlated
17 ZNF140 2 99.0 Highly correlated
18 ZNF141 2 43.0 Weakly correlated
19 ZNF429 2 28.9 Weakly correlated
20 ZNF519 2 19.6 Weakly correlated
21 ZNF263 2 180.0 Weakly correlated
22 ZKSCAN1 2 160.0 Weakly correlated
23 ZNF701 2 28.9 Weakly correlated
24 ZNF549 2 87.0 Moderately correlated
25 ZNF41 2 99.0 Highly correlated
26 ZNF735 1 28.9 Weakly correlated
27 ZNF674 1 99.0 Highly correlated
28 ZNF679 1 28.9 Weakly correlated
29 ZNF528 1 43.0 Weakly correlated
30 ZNF26 1 99.0 Highly correlated
31 ZNF723 1 15.2 Weakly correlated
32 ZNF394 1 99.0 Highly correlated
33 ZNF347 1 43.0 Weakly correlated
34 ZNF707 1 74.0 Weakly correlated
35 ZFP37 1 99.0 Highly correlated
36 ZNF257 1 0.0 Weakly correlated
37 ZNF793 1 99.0 Highly correlated
38 ZNF585A 1 99.0 Highly correlated
39 ZNF264 1 99.0 Highly correlated
40 ZNF680 1 28.9 Weakly correlated
41 ZNF485 1 94.0 Moderately correlated
42 ZNF136 1 74.0 Weakly correlated
43 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Moderately correlated
2 ZNF33A 99.0 Highly correlated
3 ZNF589 28.9 Weakly correlated
4 ZNF75D 94.0 Moderately correlated