ZRdb KZFP & Repeats
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LTR_MER87B

  • Name
    MER87B
  • Repbase
    MER87B
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000945
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaacagtgaaacagcaaaagaactaacataactaactccatttttgtttaaggggcctttacccattcctgcacgtaggctaggataattttagagcactgagataatatgcaaaaacagcaatcatgtagtttttaaaactaactctgggattaaaggggaagtatgtaaacaactaactgttttgttaaagatttataggagcattgtgacctgaccaaggacaaagaagnncgttcccaacctcctcggaccctcgctggcgcccagatgtctgcggtcgtcggtcacctcttgatcccaaccccctcctcttcccctgcccttaacataaaaagagcctgaaatttgtactgacttaagatggtactttaggacancgntnctagtccaccatcttctcggtttgctggctctccgaataaacctgcttttcctcccnaccaactcctcgtctctcgngtttggctttcgagcggcgagcagccgaacctgggttcggttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 7 99.0 Weakly correlated
2 ZNF766 7 43.0 Weakly correlated
3 ZNF680 6 28.9 Weakly correlated
4 ZNF799 6 43.0 Weakly correlated
5 ZFP69B 4 99.0 Weakly correlated
6 ZNF2 4 99.0 Weakly correlated
7 ZNF324 3 99.0 Weakly correlated
8 ZNF584 3 99.0 Weakly correlated
9 ZNF558 3 99.0 Weakly correlated
10 ZNF394 3 99.0 Weakly correlated
11 ZNF263 3 180.0 Weakly correlated
12 ZNF175 3 94.0 Weakly correlated
13 ZFP37 3 99.0 Weakly correlated
14 ZNF282 2 319.0 Weakly correlated
15 ZNF317 2 99.0 Weakly correlated
16 ZNF331 2 94.0 Weakly correlated
17 ZNF197 2 99.0 Weakly correlated
18 ZNF701 2 28.9 Weakly correlated
19 ZNF679 2 28.9 Weakly correlated
20 ZNF823 1 43.0 Weakly correlated
21 ZNF778 1 74.0 Highly correlated
22 ZNF723 1 15.2 Weakly correlated
23 ZNF705B 1 28.9 Weakly correlated
24 ZNF816 1 28.9 Weakly correlated
25 ZNF671 1 94.0 Weakly correlated
26 ZNF610 1 28.9 Weakly correlated
27 ZNF585B 1 99.0 Weakly correlated
28 ZNF563 1 28.9 Weakly correlated
29 ZNF534 1 19.6 Weakly correlated
30 ZNF485 1 94.0 Weakly correlated
31 ZNF479 1 6.4 Weakly correlated
32 ZNF471 1 94.0 Weakly correlated
33 ZNF468 1 28.9 Weakly correlated
34 ZNF274 1 99.0 Weakly correlated
35 ZNF257 1 0.0 Weakly correlated
36 ZNF248 1 99.0 Weakly correlated
37 ZNF133 1 99.0 Weakly correlated
38 ZKSCAN8 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF799 3 43.0 Weakly correlated
2 ZNF680 2 28.9 Weakly correlated
3 ZNF317 2 99.0 Weakly correlated
4 ZNF584 1 99.0 Weakly correlated
5 ZNF175 1 94.0 Weakly correlated
6 ZNF248 1 99.0 Weakly correlated
7 ZNF585B 1 99.0 Weakly correlated
8 ZNF766 1 43.0 Weakly correlated
9 ZNF816 1 28.9 Weakly correlated
10 ZNF257 1 0.0 Weakly correlated
11 ZNF197 1 99.0 Weakly correlated
12 ZNF723 1 15.2 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats