ZRdb KZFP & Repeats
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LTR_MER84

  • Name
    MER84
  • Repbase
    MER84
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000942
Description :

MER84 has 5 bp TSDs, and is distantly related to MER83. Note that MERstands for MEdium Reiteration frequency interspersed repeat. As such,MERs as a group are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaggagagcaaagatcacctggtgaccatcaagcaggccatccggaggcaaaactccttatctgaggaatttagaagtaattagacttccctattatctaaagccggcatctggttccaggcttctttccccaaaaatttataagtaactagaatttctatacatctccggaatgcatgcatgtcgaaactcattgtgcaacccttgctgacatcaaggcaccaaaatgtctacaaatgtaatcatttatcatgacctacgtggctaatatggtccaaattacccttaagctcccgctttaaggtccataaatacccctaaggaaaaatccaccgcggcgcgctcagtcctctcttgctgaggcgccccgctgcactcttctgcagcgttctttctntctaataaaactttcctttttcaaacctatactgttgtcggtaaattcttcttaccaacccgcgagtcgaccactttccgatgccggggctctgacacctcgcccggca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZKSCAN1 6 160.0 Weakly correlated
2 ZNF793 6 99.0 Weakly correlated
3 ZNF680 6 28.9 Moderately correlated
4 ZNF766 6 43.0 Highly correlated
5 ZNF394 5 99.0 Weakly correlated
6 ZNF382 5 99.0 Weakly correlated
7 ZNF175 5 94.0 Weakly correlated
8 ZNF589 4 28.9 Moderately correlated
9 ZNF701 3 28.9 Moderately correlated
10 ZNF197 3 99.0 Weakly correlated
11 ZNF28 3 28.9 Moderately correlated
12 ZKSCAN8 3 160.0 Weakly correlated
13 ZNF679 2 28.9 Moderately correlated
14 ZNF610 2 28.9 Moderately correlated
15 ZNF597 2 94.0 Weakly correlated
16 ZFP37 2 99.0 Weakly correlated
17 ZNF823 2 43.0 Highly correlated
18 ZNF263 2 180.0 Weakly correlated
19 ZNF317 2 99.0 Weakly correlated
20 ZNF101 1 43.0 Highly correlated
21 ZNF479 1 6.4 Weakly correlated
22 ZNF813 1 28.9 Moderately correlated
23 ZNF141 1 43.0 Highly correlated
24 ZNF780A 1 43.0 Highly correlated
25 ZNF251 1 94.0 Weakly correlated
26 ZNF736 1 43.0 Highly correlated
27 ZNF274 1 99.0 Weakly correlated
28 ZNF2 1 99.0 Weakly correlated
29 ZNF605 1 99.0 Weakly correlated
30 ZNF324 1 99.0 Weakly correlated
31 ZNF425 1 94.0 Weakly correlated
32 ZNF585A 1 99.0 Weakly correlated
33 ZNF584 1 99.0 Weakly correlated
34 ZNF528 1 43.0 Highly correlated
35 ZNF519 1 19.6 Weakly correlated
36 ZNF486 1 8.6 Weakly correlated
37 ZNF485 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF793 5 99.0 Weakly correlated
2 ZNF28 3 28.9 Moderately correlated
3 ZKSCAN1 2 160.0 Weakly correlated
4 ZNF589 2 28.9 Moderately correlated
5 ZNF263 2 180.0 Weakly correlated
6 ZNF605 1 99.0 Weakly correlated
7 ZNF175 1 94.0 Weakly correlated
8 ZNF610 1 28.9 Moderately correlated
9 ZNF597 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats