ZRdb KZFP & Repeats
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LTR_MER83C

  • Name
    MER83C
  • Repbase
    MER83C
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000941
Description :

MER83C has 5 bp TSDs. Note that MER stands for MEdium Reiterationfrequency interspersed repeat. As such, MERs as a group are a grab bagof DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggagtcctgataagataagtaagcaacaacgaggaaggggccccaggtgggggagaacaattgttctgagagacggctaatcacagacaacccgctggcacaacatcctgttcccaaatacctcgctccgcacgtagccccagcagcacgaccttattctgcacgtagccccctccagcacgaccctataaaacttccctccagcccctgcctctttgcagacagccccttctctgctgtgctgcccgttgcacccttgcaacgtatcttcgtactttctctaataaatctgcctttctttacctacgactgtcttggtaaattcttttaccgcccgcgacgccggccccagccagtcgcacccgcgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF808 9 19.6 Weakly correlated
2 ZNF766 7 43.0 Highly correlated
3 ZNF486 7 8.6 Weakly correlated
4 ZNF263 6 180.0 Weakly correlated
5 ZNF251 4 94.0 Weakly correlated
6 ZNF18 3 160.0 Weakly correlated
7 ZNF257 3 0.0 Weakly correlated
8 ZKSCAN8 2 160.0 Weakly correlated
9 ZNF585B 2 99.0 Weakly correlated
10 ZNF534 2 19.6 Weakly correlated
11 ZNF440 2 28.9 Moderately correlated
12 ZNF175 2 94.0 Weakly correlated
13 ZNF197 2 99.0 Weakly correlated
14 ZNF382 2 99.0 Weakly correlated
15 ZNF589 1 28.9 Moderately correlated
16 ZNF91 1 6.0 Weakly correlated
17 ZFP37 1 99.0 Weakly correlated
18 ZNF793 1 99.0 Weakly correlated
19 ZNF778 1 74.0 Weakly correlated
20 ZNF705B 1 28.9 Moderately correlated
21 ZNF675 1 8.6 Weakly correlated
22 ZNF610 1 28.9 Moderately correlated
23 ZNF584 1 99.0 Weakly correlated
24 ZNF274 1 99.0 Weakly correlated
25 ZNF506 1 28.9 Moderately correlated
26 ZNF350 1 99.0 Weakly correlated
27 ZNF471 1 94.0 Weakly correlated
28 ZNF44 1 43.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF257 2 0.0 Weakly correlated
2 ZNF263 1 180.0 Weakly correlated
3 ZNF440 1 28.9 Moderately correlated
4 ZNF44 1 43.0 Highly correlated
5 ZNF471 1 94.0 Weakly correlated
6 ZNF675 1 8.6 Weakly correlated
7 ZNF175 1 94.0 Weakly correlated
8 ZNF584 1 99.0 Weakly correlated
9 ZNF585B 1 99.0 Weakly correlated
10 ZNF793 1 99.0 Weakly correlated
11 ZNF18 1 160.0 Weakly correlated
12 ZNF197 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats