ZRdb KZFP & Repeats
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LTR_MER83B-INT

  • Name
    MER83B-INT
  • Repbase
    MER83BI
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000940
Description :

MER83B-int is a MER4-int group retrovirus-like element flanked by MER83BLTRs. Note that MER stands for MEdium Reiteration frequencyinterspersed repeat. As such, MERs as a group are a grab bag of DNAtransposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
cacccnnnncattttggtggcccatacggggactctctctccttacggggaactctctcccctactctctcccttttctcttttccaactccggnccctcggtggacagcgtccaagcacggagacaactgaaggtccccggccggggctacnccccggcggaccggaaggtgtccgtgtggaagcgtctgaccgccgccgcccgatcgggtgagagtccagagtttnctttctcttttcagtcttccggcggacaanctctagtatccctctggcaattgacggcaactggccagggccactccctggtgtngcctgaaggccagggggtgaacaggtttggctgccttgcccggaagggaggaaggctctctcctatcctttctggtcaaaagtccccaatccctacgtgtggcgcgattggcagcggaagctcgaccagggcgaacccacacacgttttggggaactcagaccccctctttctcactctaaattctcccgtgaagacagccagccatcctgctccggacgtcgctaaaccaggtgatctcaaacggcctcagaacggtgagtcttcccatncccgccccctctcctgggctggcaccaggcngagttctccctttaccctttttcctcgtacctgggctgatcacccagcgtaantgagtacctggactggccatccagcgtaaggcccccgagcgnccgggaggtcctttctaataggtgggacgcccctttggaaagtgcacccgagtccctcagcggacgtgagtggaacccttttcgnctcggcgggatgccccgagagaaantgcggttcgtgtccccagcggacgttanccccnagcggctcgtcgttttccagtcccaccatgggacaaaccccntctattccttcagactcacctctgggctgcattctaaagcattgggataaatttgaccctcagactctcaaaaagaaacgtctaattttcttgtgtaatacagcatggcccctatgcaggaaatcctcaaattagcctcctcagtcttttataaccgagagcagaataaggaggacagggctaaggagaaagagaaacgcagggacaagaggcaggctcaactgttggctgctttacaagcccccagccccctccaggttgccctaaggacactcctccaggtaactgccatcggtgcagaaggccaggccactggaaggcaaactgccccaatgggataaatgggaaaaagccccgcacggcttgccccctctgccacaagctcggccactggaaacgggactgccctgagggccgaagggcccccgggacagaatcccaacccctgatggccttgagctgaagngggctctctgctccggctggcttccaaatcagacatcgtcatcaacaggacaaagccaagggcaactctggaggcggcaagtaaaattataaatttcccttttgggttcaagagctgcctatcatggagatgcctcctctacccctttctggaaatnacctcttgcttatantggtaaaaacctggaaaattactatctggactttaanaggcttttggattgagtcactattggaactgagtacaccattgaaagaaaaaggttaaattaaaagaaggacgcatgataatgtcatggctagccttaaaaaattctcttgagcagttaaaatcctttgcaagctcgaaaatgactgctctagactccttctgggaaaagcaatagcagtcaccttgtgctgtagctcagtngctaaggctttgccctttcacaatgcggcggcctgggttcaattcctggcttagggaatgagtcctttctggtttgatatttgtgngacttttgccatttattgattcttttcccctccatggacagcttctgatttcctgtcttgaattttcctttctctgagctacctttggggcgattctagatcttgtaaatcgcttgccatctctttggagacacctcgtgcgtccgtggttaagtcatanccttagttaaggcttattgatttcacgtgggaggttacctttggtaaaagattcaaaagccagaaatatcggccgtttgtcctggctaaaatctggtaataaaagattttaaaagnatttttcttttgagagctccgtagttagaagtcaacttaattaaagctgatatttgggcttatgtgtacagatattgttttaaagcccctgctctccctctaaaaacttctcagtcgacggaattctgtcttgattctccgtttctgtctgtgtatttatatgtgtttatataaaagagctctaattaattggcttaaagaaaaataagcgcttaaatcaaatattgtcagaaaaatagaaactttaatgccttttagttcacgtgactctaataatctttggnaaataaagacagtttaaagattattggtaaaataaaataaaaatgtcttcaaaatttagacatttggtctaaattaggcaggtcagatactgtttgctagatgctttaaggtcataaactgcttctatgacttttgataattgtttgacttgtctgttttacagccattagattctaggtaaggcctggggacatatggagttagccangtcccctggctaggctgggaagagtcagacattgtctgcagctctgtccttgtcctgggctctgcaatctgatacatggttaaaattgcttacttaccaggtttttcaccaaaaataaaagttgctaagagttaacattgtaacatgtanttgagactactggagaaacagttttacatgcaaggtgtataaggaaagtagaatgtgtttttggtaaaaggttataagaaggcatgggaatatggtttttgttaaagggaatgtaattttgtctagttcagaggnttttaaggattgtcttaanctaaaagagtaatgggacaaaactgaaggtttaagcaagttgtaaagggtttgtgaaagattgatcttgtaaaagaagttctgtgggtatgagcaagttggctaagatttgaaggggattatttagtttttccgtaggttgaacattgaaataaaagcacactgatgcagggccagaatctgggcccatgtgtctgaataacagttttcttagagaattgatctgctgtttaacagaaaattgtaaagggttataagaggtttatggaaatcttaccttatggtcaaactgattaagattggatagatttgtttataaggttttattaagaattgggtttaacattaatagtacactaatgcaaaggtgaaatttggctttctcttttgaacaagattttcgtgtaatattaaaagataatgaaagatttttgtttgccttttgaataaacgacagaaaaaggaggggagagaaaggagacagattcagttggcctcatgctgtctttattgggtcctgtttggaaagctgagtctcccctctatcagcgagtaaagatttttgcctttnaaaaattttngagttatcattttggctaaaaaatgacttacagtgactctgtgctaatctccttctctgagcaactctcctccaaatcctgttgggtaatgggggcaaatggcaccccctccctccaaaagaaaaattcacacccctttatattacttaagggaccaattaccattctcccaccagtccctggtaatgtctaaataccccacacccctttggggcaaaaatatactttccaagatgggtgcccgcttaatatttacccaacctctgaattcatctttccctctaatagccctatttctcccgggaaagctacctaaatctttaaccaataacttcaacctggacagtcctacctcaggggtttaaaatagcccacacttattcagacaagccctagcaagaaatctaaccgagcaatctcttgagggggataacttctacagtatgtagataacctccttatctgctcccccttcacaggactcgcacagcaacatgcagtacaaaccttaacttcctaacagaaggaaaatgacttttgtctaattcaaaggttatttaaaggttatatataaaacaaggtaaaaggaaccaggaaataagagagacgtaaagaaagttataaangtaaagaggtatttttggtaaggaaggttataaagaaaaagattttatatgagaaaggatcttgtatggtaaattcttgtcctaaagtaaaatgactggttgtttaagaaagagggatgtttaggacaagtcagaaagtctaagcatgtcgtagatggtctgtgnaagtcatgaaaaaatttatgaagggaatttataaaaggaatnttgtatgtaattaaggtataatagtctctctaaaattggttccctatgctgtgtctaattaaattcaaacactttttcatcgagtttaacttccaggttatctaaatgggcttccaataaggaaaaacagtcacactgcaaaaggtttttctttgccttttcggtaactggcttaagaaacaaaattttatcttctagaattcagcagtttcaccttcaaatgatgctgcgaacgggatatcagtctctccccaatgatgcctgctacctttacgaatctcccctggattcagctggacaccagtttcgccttgacatgctccccctctctgatgagtcccttcctccagcaagatccaatatcctaagtcccacaatccgggacaatgacccacagggtctcctgacagaccaacaaccataggtagggtcaactctacgccccaggccagcaggaagtagttggaagatgagacctccgccccaatgccaaagatttgtcattgttgttctgtcaggggggaatgtggagtc
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 11 19.6 Weakly correlated
2 ZNF723 11 15.2 Weakly correlated
3 ZNF263 9 180.0 Weakly correlated
4 ZNF382 9 99.0 Highly correlated
5 ZNF486 5 8.6 Weakly correlated
6 ZNF506 4 28.9 Weakly correlated
7 ZNF101 4 43.0 Weakly correlated
8 ZNF479 4 6.4 Weakly correlated
9 ZNF320 4 28.9 Weakly correlated
10 ZFP69B 3 99.0 Highly correlated
11 ZNF558 3 99.0 Highly correlated
12 ZNF680 3 28.9 Weakly correlated
13 ZIM3 3 87.0 Moderately correlated
14 ZNF317 2 99.0 Highly correlated
15 ZNF701 2 28.9 Weakly correlated
16 ZNF682 2 28.9 Weakly correlated
17 ZNF394 2 99.0 Highly correlated
18 ZNF679 2 28.9 Weakly correlated
19 ZNF610 2 28.9 Weakly correlated
20 ZNF766 2 43.0 Weakly correlated
21 ZNF554 2 99.0 Highly correlated
22 ZNF8 1 99.0 Highly correlated
23 ZNF547 1 74.0 Weakly correlated
24 ZNF549 1 87.0 Moderately correlated
25 ZFP37 1 99.0 Highly correlated
26 ZNF786 1 99.0 Highly correlated
27 ZNF735 1 28.9 Weakly correlated
28 ZNF716 1 19.6 Weakly correlated
29 ZNF705D 1 28.9 Weakly correlated
30 ZNF33B 1 99.0 Highly correlated
31 ZKSCAN1 1 160.0 Weakly correlated
32 ZNF251 1 94.0 Moderately correlated
33 ZNF257 1 0.0 Weakly correlated
34 ZNF264 1 99.0 Highly correlated
35 ZNF28 1 28.9 Weakly correlated
36 ZNF2 1 99.0 Highly correlated
37 ZNF324 1 99.0 Highly correlated
38 ZNF33A 1 99.0 Highly correlated
39 ZNF528 1 43.0 Weakly correlated
40 ZNF383 1 99.0 Highly correlated
41 ZNF440 1 28.9 Weakly correlated
42 ZNF44 1 43.0 Weakly correlated
43 ZNF468 1 28.9 Weakly correlated
44 ZNF485 1 94.0 Moderately correlated
45 ZNF490 1 43.0 Weakly correlated
46 ZNF510 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 10 15.2 Weakly correlated
2 ZNF534 4 19.6 Weakly correlated
3 ZNF101 2 43.0 Weakly correlated
4 ZNF506 2 28.9 Weakly correlated
5 ZIM3 2 87.0 Moderately correlated
6 ZNF320 2 28.9 Weakly correlated
7 ZNF680 2 28.9 Weakly correlated
8 ZNF735 1 28.9 Weakly correlated
9 ZNF554 1 99.0 Highly correlated
10 ZNF485 1 94.0 Moderately correlated
11 ZNF33B 1 99.0 Highly correlated
12 ZNF28 1 28.9 Weakly correlated
13 ZNF8 1 99.0 Highly correlated
14 ZNF44 1 43.0 Weakly correlated
15 ZNF263 1 180.0 Weakly correlated
16 ZNF479 1 6.4 Weakly correlated
17 ZNF383 1 99.0 Highly correlated
18 ZNF264 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF723 15.2 Weakly correlated