ZRdb KZFP & Repeats
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LTR_MER83

  • Name
    MER83
  • Repbase
    MER83
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000937
Description :

MER83 has 5 bp TSDs, and is distantly related to MER84. Note that MERstands for MEdium Reiteration frequency interspersed repeat. As such,MERs as a group are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggagtcctaattagggaaaaggagtcaggctggcgggaccaggggaaagcaaaaagagaaagcagataagctataagtctgcctttcttcatggtccaggacacatagccctcctgcgcaaataactcacaatcttcctgcgcccagctatcaccagacacctcggctgatagaaaaatgcaagttagctcactgcaaccttggcgttatcagtactgcacgaagccctcttcagcacacagcacaagcaccatcctataaaatccccagcaagcctttgtctccttgcagtcagctcctctcttgctgacctgcccgttgcntccttgcaacgtattttcatactttctctaataaatctgcctttctttacctacaactgtcttggtaaattcttttaccccccgcgccaccggccccagatagtcgccgctcacccgcgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 38 43.0 Highly correlated
2 ZNF486 32 8.6 Weakly correlated
3 ZNF589 19 28.9 Moderately correlated
4 ZNF175 18 94.0 Weakly correlated
5 ZNF584 17 99.0 Weakly correlated
6 ZNF382 17 99.0 Weakly correlated
7 ZKSCAN8 15 160.0 Weakly correlated
8 ZNF197 15 99.0 Weakly correlated
9 ZNF251 13 94.0 Weakly correlated
10 ZKSCAN1 11 160.0 Weakly correlated
11 ZNF394 11 99.0 Weakly correlated
12 ZNF680 10 28.9 Moderately correlated
13 ZNF263 8 180.0 Weakly correlated
14 ZNF610 7 28.9 Moderately correlated
15 ZNF2 7 99.0 Weakly correlated
16 ZNF274 7 99.0 Weakly correlated
17 ZNF18 7 160.0 Weakly correlated
18 ZNF230 6 28.9 Moderately correlated
19 ZFP37 6 99.0 Weakly correlated
20 ZFP57 6 87.0 Weakly correlated
21 ZIM3 5 87.0 Weakly correlated
22 ZFP69B 4 99.0 Weakly correlated
23 ZNF317 4 99.0 Weakly correlated
24 ZNF554 4 99.0 Weakly correlated
25 ZNF101 4 43.0 Highly correlated
26 ZNF547 4 74.0 Weakly correlated
27 ZNF823 3 43.0 Highly correlated
28 ZNF490 3 43.0 Highly correlated
29 ZNF425 3 94.0 Weakly correlated
30 ZNF679 3 28.9 Moderately correlated
31 ZNF182 3 99.0 Weakly correlated
32 ZNF468 2 28.9 Moderately correlated
33 ZNF479 2 6.4 Weakly correlated
34 ZNF723 2 15.2 Weakly correlated
35 ZNF429 2 28.9 Moderately correlated
36 ZNF705B 2 28.9 Moderately correlated
37 ZNF92 1 28.9 Moderately correlated
38 ZNF701 1 28.9 Moderately correlated
39 ZNF705D 1 28.9 Moderately correlated
40 ZNF75D 1 94.0 Weakly correlated
41 PRDM9 1 0.0 Weakly correlated
42 ZNF793 1 99.0 Weakly correlated
43 ZNF674 1 99.0 Weakly correlated
44 ZNF585B 1 99.0 Weakly correlated
45 ZNF585A 1 99.0 Weakly correlated
46 ZNF558 1 99.0 Weakly correlated
47 ZNF549 1 87.0 Weakly correlated
48 ZNF528 1 43.0 Highly correlated
49 ZNF44 1 43.0 Highly correlated
50 ZNF41 1 99.0 Weakly correlated
51 ZNF347 1 43.0 Highly correlated
52 ZNF264 1 99.0 Weakly correlated
53 ZNF257 1 0.0 Weakly correlated
54 ZNF141 1 43.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF589 7 28.9 Moderately correlated
2 ZNF251 7 94.0 Weakly correlated
3 ZNF584 5 99.0 Weakly correlated
4 ZNF197 4 99.0 Weakly correlated
5 ZNF175 4 94.0 Weakly correlated
6 ZNF680 3 28.9 Moderately correlated
7 ZNF823 3 43.0 Highly correlated
8 ZKSCAN8 2 160.0 Weakly correlated
9 ZNF468 2 28.9 Moderately correlated
10 ZNF486 2 8.6 Weakly correlated
11 ZNF18 1 160.0 Weakly correlated
12 ZNF723 1 15.2 Weakly correlated
13 ZNF429 1 28.9 Moderately correlated
14 ZNF766 1 43.0 Highly correlated
15 ZNF674 1 99.0 Weakly correlated
16 ZNF549 1 87.0 Weakly correlated
17 ZNF44 1 43.0 Highly correlated
18 ZNF274 1 99.0 Weakly correlated
19 ZNF263 1 180.0 Weakly correlated
20 ZNF585A 1 99.0 Weakly correlated
21 ZNF425 1 94.0 Weakly correlated
22 ZNF793 1 99.0 Weakly correlated
23 ZNF620 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF589 28.9 Moderately correlated