ZRdb KZFP & Repeats
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LTR_MER77B

  • Name
    MER77B
  • Repbase
    LTR77B
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000934
Description :

Originally named LTR77B. Note that MER stands for MEdium Reiterationfrequency interspersed repeat. As such, MERs as a group are a grab bagof DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgtagtaaagaatttaaccttgcccaaagagaggtctggcctttgccctcggctcctgggaggtaatctctaagcccttggaatgtcntgcctgataggagtgtctttgtttgcctgggggccttgggccacgccggatagtctaacaatgtgatttagggtgggggctggccacgccagaaagaccaacnatgtgatttagggtgggggctttgggtcacgcggtatcagcccgactccggagggnctggagactgagntcagccacgtgggcaatcaatcaatcatgcctacgtgatggagccccaataaaaactctggacaccgaggctcgggtgagcttccctggttggcaatactccgtgcgtattgtcacacatcgatgccgggagagtaacgctgtccctgactccacggggagaggacaactggaagctccgcgtttggaaccctcccggactctgccctatgtaccgcgcgcctcttcccttggctgattttaatctgtatcctttccctgtaataaaccgtaaccgtgagtataacagctttcagtgagttctncgtgagtccttctagcgaattatcgaacctgagggtggttttgggaaccccccgaacttgcagttggtgtcagaagtgagggcggtcttgtgtggactgtgtccctctaactttgcagttggctaactttcaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 71 99.0 Highly correlated
2 ZNF766 45 43.0 Weakly correlated
3 ZNF92 31 28.9 Weakly correlated
4 ZNF479 30 6.4 Weakly correlated
5 ZNF589 28 28.9 Weakly correlated
6 ZNF175 27 94.0 Moderately correlated
7 ZNF263 27 180.0 Weakly correlated
8 ZNF789 25 99.0 Highly correlated
9 ZNF584 20 99.0 Highly correlated
10 ZNF394 20 99.0 Highly correlated
11 ZFP69B 19 99.0 Highly correlated
12 ZKSCAN1 19 160.0 Weakly correlated
13 ZKSCAN8 18 160.0 Weakly correlated
14 ZFP37 17 99.0 Highly correlated
15 ZNF317 16 99.0 Highly correlated
16 ZNF197 14 99.0 Highly correlated
17 ZNF723 10 15.2 Weakly correlated
18 ZNF534 10 19.6 Weakly correlated
19 ZNF679 10 28.9 Weakly correlated
20 ZNF2 10 99.0 Highly correlated
21 ZNF793 10 99.0 Highly correlated
22 ZNF75D 8 94.0 Moderately correlated
23 ZNF554 8 99.0 Highly correlated
24 ZNF320 8 28.9 Weakly correlated
25 ZNF101 8 43.0 Weakly correlated
26 ZNF324 7 99.0 Highly correlated
27 ZNF558 7 99.0 Highly correlated
28 ZNF597 6 94.0 Moderately correlated
29 ZNF701 6 28.9 Weakly correlated
30 ZNF18 5 160.0 Weakly correlated
31 ZNF735 5 28.9 Weakly correlated
32 ZNF682 5 28.9 Weakly correlated
33 ZNF8 5 99.0 Highly correlated
34 ZNF506 4 28.9 Weakly correlated
35 ZNF331 4 94.0 Moderately correlated
36 ZIM3 4 87.0 Moderately correlated
37 ZNF274 4 99.0 Highly correlated
38 ZNF140 4 99.0 Highly correlated
39 ZNF257 4 0.0 Weakly correlated
40 ZNF490 3 43.0 Weakly correlated
41 ZNF610 3 28.9 Weakly correlated
42 ZNF705D 3 28.9 Weakly correlated
43 ZNF264 3 99.0 Highly correlated
44 ZNF251 3 94.0 Moderately correlated
45 ZNF486 3 8.6 Weakly correlated
46 ZNF707 2 74.0 Weakly correlated
47 ZNF202 2 160.0 Weakly correlated
48 ZNF705B 2 28.9 Weakly correlated
49 ZNF133 2 99.0 Highly correlated
50 ZFP57 2 87.0 Moderately correlated
51 ZNF695 2 28.9 Weakly correlated
52 ZNF28 2 28.9 Weakly correlated
53 ZNF528 2 43.0 Weakly correlated
54 ZNF680 2 28.9 Weakly correlated
55 ZNF549 1 87.0 Moderately correlated
56 ZNF485 1 94.0 Moderately correlated
57 ZNF91 1 6.0 Weakly correlated
58 ZNF879 1 99.0 Highly correlated
59 ZNF85 1 28.9 Weakly correlated
60 ZNF808 1 19.6 Weakly correlated
61 ZNF468 1 28.9 Weakly correlated
62 ZNF547 1 74.0 Weakly correlated
63 ZNF786 1 99.0 Highly correlated
64 ZNF778 1 74.0 Weakly correlated
65 ZNF765 1 8.6 Weakly correlated
66 ZNF44 1 43.0 Weakly correlated
67 ZNF441 1 43.0 Weakly correlated
68 ZNF560 1 43.0 Weakly correlated
69 ZNF565 1 99.0 Highly correlated
70 ZNF429 1 28.9 Weakly correlated
71 ZNF585A 1 99.0 Highly correlated
72 ZNF417 1 28.9 Weakly correlated
73 ZNF284 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF789 23 99.0 Highly correlated
2 ZNF479 13 6.4 Weakly correlated
3 ZNF382 7 99.0 Highly correlated
4 ZNF723 6 15.2 Weakly correlated
5 ZNF554 5 99.0 Highly correlated
6 ZNF263 5 180.0 Weakly correlated
7 ZNF534 5 19.6 Weakly correlated
8 ZNF589 5 28.9 Weakly correlated
9 ZFP69B 5 99.0 Highly correlated
10 ZNF175 5 94.0 Moderately correlated
11 ZNF793 5 99.0 Highly correlated
12 ZNF75D 4 94.0 Moderately correlated
13 ZNF506 4 28.9 Weakly correlated
14 ZNF320 3 28.9 Weakly correlated
15 ZFP37 3 99.0 Highly correlated
16 ZNF597 3 94.0 Moderately correlated
17 ZNF766 2 43.0 Weakly correlated
18 ZNF584 2 99.0 Highly correlated
19 ZNF197 2 99.0 Highly correlated
20 ZNF701 1 28.9 Weakly correlated
21 ZNF92 1 28.9 Weakly correlated
22 ZNF468 1 28.9 Weakly correlated
23 ZNF485 1 94.0 Moderately correlated
24 ZNF85 1 28.9 Weakly correlated
25 ZNF707 1 74.0 Weakly correlated
26 ZNF735 1 28.9 Weakly correlated
27 ZNF490 1 43.0 Weakly correlated
28 ZNF429 1 28.9 Weakly correlated
29 ZNF682 1 28.9 Weakly correlated
30 ZNF680 1 28.9 Weakly correlated
31 ZNF417 1 28.9 Weakly correlated
32 ZNF257 1 0.0 Weakly correlated
33 ZNF8 1 99.0 Highly correlated
34 ZNF679 1 28.9 Weakly correlated
35 ZNF2 1 99.0 Highly correlated
36 ZNF44 1 43.0 Weakly correlated
37 ZNF101 1 43.0 Weakly correlated
38 ZIM3 1 87.0 Moderately correlated
39 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats