ZRdb KZFP & Repeats
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LTR_MER77

  • Name
    MER77
  • Repbase
    MER77
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000933
Description :

MER77 has 5 bp TSDs, and is related to the MER68A/B LTRs. It wasoriginally presented in the opposite orientation. Note that MER standsfor MEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgcagtaaagggttaactcagcaggcctgggttgctcaaaccctgcacattccaaagaaaggnctggcccttgnccggctcctgggagataacctctaagcccttggaatatcctgcctgataagagtgtctttgtntacctggggccttgggccacgccagatagtttatgctaacaatgtgatttatggtgggggccttgggccacgcngtatcagtttgacctctggaggggctggagactgagtagctaaggtcagccacgcgggcgctccatgcctacgtgaccgacccccaataaaaaccctggacaccaaggctcgggtgagcttccctggttggcaatactccgcgcgtgttgtcacacatcgttgctgggagaattaagcgctgtccgtacgactccactgggagaggacaactggaagctcgcgcctggtctctcctggactctgccctatgcgccttttcctttgctgattttaatctgtatcctttcgctgtaataaaccgtaaccgtgagtataacagcttttctgagttctgtgagtccttctagcgaatcatcgaacctgagggtggtcttggggacccccgacaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 45 99.0 Highly correlated
2 ZNF479 36 6.4 Weakly correlated
3 ZNF766 29 43.0 Weakly correlated
4 ZNF394 19 99.0 Highly correlated
5 ZNF263 18 180.0 Weakly correlated
6 ZNF680 17 28.9 Weakly correlated
7 ZNF175 14 94.0 Moderately correlated
8 ZNF18 14 160.0 Weakly correlated
9 ZNF589 14 28.9 Weakly correlated
10 ZKSCAN1 13 160.0 Weakly correlated
11 ZNF554 13 99.0 Highly correlated
12 ZNF584 12 99.0 Highly correlated
13 ZNF197 12 99.0 Highly correlated
14 ZFP37 11 99.0 Highly correlated
15 ZNF101 9 43.0 Weakly correlated
16 ZNF534 9 19.6 Weakly correlated
17 ZNF701 9 28.9 Weakly correlated
18 ZNF723 8 15.2 Weakly correlated
19 ZNF92 7 28.9 Weakly correlated
20 ZKSCAN8 7 160.0 Weakly correlated
21 ZNF257 6 0.0 Weakly correlated
22 ZNF679 6 28.9 Weakly correlated
23 ZFP69B 6 99.0 Highly correlated
24 ZNF506 6 28.9 Weakly correlated
25 ZNF547 6 74.0 Weakly correlated
26 ZNF317 6 99.0 Highly correlated
27 ZNF558 5 99.0 Highly correlated
28 ZNF324 5 99.0 Highly correlated
29 ZNF2 4 99.0 Highly correlated
30 ZNF789 4 99.0 Highly correlated
31 ZNF320 4 28.9 Weakly correlated
32 ZNF528 4 43.0 Weakly correlated
33 ZNF485 3 94.0 Moderately correlated
34 ZNF793 3 99.0 Highly correlated
35 ZNF735 3 28.9 Weakly correlated
36 ZNF682 3 28.9 Weakly correlated
37 ZNF597 3 94.0 Moderately correlated
38 ZFP57 3 87.0 Moderately correlated
39 ZNF182 3 99.0 Highly correlated
40 ZNF44 3 43.0 Weakly correlated
41 ZNF251 3 94.0 Moderately correlated
42 ZNF705B 2 28.9 Weakly correlated
43 ZNF350 2 99.0 Highly correlated
44 ZNF705D 2 28.9 Weakly correlated
45 ZNF549 2 87.0 Moderately correlated
46 ZIM3 2 87.0 Moderately correlated
47 ZNF141 2 43.0 Weakly correlated
48 ZNF222 2 43.0 Weakly correlated
49 ZNF486 2 8.6 Weakly correlated
50 ZNF75D 2 94.0 Moderately correlated
51 ZNF730 2 19.6 Weakly correlated
52 ZNF136 1 74.0 Weakly correlated
53 ZNF681 1 28.9 Weakly correlated
54 ZNF8 1 99.0 Highly correlated
55 ZNF879 1 99.0 Highly correlated
56 ZNF140 1 99.0 Highly correlated
57 ZNF12 1 99.0 Highly correlated
58 ZNF792 1 94.0 Moderately correlated
59 ZNF799 1 43.0 Weakly correlated
60 ZNF823 1 43.0 Weakly correlated
61 ZNF84 1 99.0 Highly correlated
62 ZNF85 1 28.9 Weakly correlated
63 ZNF284 1 43.0 Weakly correlated
64 ZNF468 1 28.9 Weakly correlated
65 ZNF441 1 43.0 Weakly correlated
66 ZNF432 1 99.0 Highly correlated
67 ZNF425 1 94.0 Moderately correlated
68 ZNF519 1 19.6 Weakly correlated
69 ZNF30 1 94.0 Moderately correlated
70 ZNF28 1 28.9 Weakly correlated
71 ZNF286A 1 160.0 Weakly correlated
72 ZNF700 1 28.9 Weakly correlated
73 ZNF563 1 28.9 Weakly correlated
74 ZNF274 1 99.0 Highly correlated
75 ZNF585A 1 99.0 Highly correlated
76 ZNF273 1 28.9 Weakly correlated
77 ZNF610 1 28.9 Weakly correlated
78 ZNF202 1 160.0 Weakly correlated
79 ZNF189 1 99.0 Highly correlated
80 ZNF695 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 20 6.4 Weakly correlated
2 ZNF554 6 99.0 Highly correlated
3 ZNF197 5 99.0 Highly correlated
4 ZNF534 5 19.6 Weakly correlated
5 ZNF175 4 94.0 Moderately correlated
6 ZNF680 4 28.9 Weakly correlated
7 ZNF584 4 99.0 Highly correlated
8 ZNF789 4 99.0 Highly correlated
9 ZNF263 4 180.0 Weakly correlated
10 ZFP37 3 99.0 Highly correlated
11 ZNF18 3 160.0 Weakly correlated
12 ZNF382 3 99.0 Highly correlated
13 ZNF701 3 28.9 Weakly correlated
14 ZNF589 3 28.9 Weakly correlated
15 ZNF723 3 15.2 Weakly correlated
16 ZNF257 2 0.0 Weakly correlated
17 ZNF793 2 99.0 Highly correlated
18 ZNF506 2 28.9 Weakly correlated
19 ZNF44 2 43.0 Weakly correlated
20 ZNF735 2 28.9 Weakly correlated
21 ZNF101 2 43.0 Weakly correlated
22 ZNF597 1 94.0 Moderately correlated
23 ZFP57 1 87.0 Moderately correlated
24 ZNF394 1 99.0 Highly correlated
25 ZFP69B 1 99.0 Highly correlated
26 ZIM3 1 87.0 Moderately correlated
27 ZKSCAN1 1 160.0 Weakly correlated
28 ZNF792 1 94.0 Moderately correlated
29 ZNF28 1 28.9 Weakly correlated
30 ZNF585A 1 99.0 Highly correlated
31 ZNF799 1 43.0 Weakly correlated
32 ZNF558 1 99.0 Highly correlated
33 ZNF610 1 28.9 Weakly correlated
34 ZNF75D 1 94.0 Moderately correlated
35 ZNF85 1 28.9 Weakly correlated
36 ZNF350 1 99.0 Highly correlated
37 ZNF320 1 28.9 Weakly correlated
38 ZNF202 1 160.0 Weakly correlated
39 ZNF324 1 99.0 Highly correlated
40 ZNF485 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF554 99.0 Highly correlated