ZRdb KZFP & Repeats
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LTR_MER76

  • Name
    MER76
  • Repbase
    MER76
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000931
Description :

MER76 is probably an LTR: it has 5 bp TSDs, and a (ATTAAA) polyAsignal. Note that MER stands for MEdium Reiteration frequencyinterspersed repeat. As such, MERs as a group are a grab bag of DNAtransposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaggagtccggctcctggccaaaancctatgtgtgatttttcaggcccgaccataggcaattacaaaggctttacctggcaggcctcacgggggaaagctgccctccccacaccagacttggtgcacagccagtgcattgcagtctctgaagggagttgcagtcaaggactcaggcccccctggccggccatgctcttacgcatatctgcattcctagcccaggcgcctccattccgaggcctctttatcngaggccttcggcagaggccttcctcaggcgcctctgccgagacctccttatggggggaggaaggggaaccttgaagacacttttctccactctgactcagtactcagtacttttccactcctagcccttccctctcctcccctccacggccccngggtccataaaactgcaggagccttttgttcggggctccctcggcagtgagacgacccccacgtctgtgctgatccacctgaccctcgaccggtgcgccgttccatggggaaaaatggaacagtggggagtcggcgctttctccggttttagcctcttgcttataccatcgcagtaagtgattaaaggcttgactgttactttcattttcggcttgttgccttaatcggctactccgacacctggcagctcagctctctctcccagctcagctgagctcctgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 36 99.0 Highly correlated
2 ZNF263 26 180.0 Weakly correlated
3 ZNF394 18 99.0 Highly correlated
4 ZFP37 15 99.0 Highly correlated
5 ZNF766 15 43.0 Weakly correlated
6 ZNF679 14 28.9 Weakly correlated
7 ZNF680 12 28.9 Weakly correlated
8 ZNF554 10 99.0 Highly correlated
9 ZNF558 9 99.0 Highly correlated
10 ZNF589 9 28.9 Weakly correlated
11 ZNF2 9 99.0 Highly correlated
12 ZNF793 8 99.0 Highly correlated
13 ZNF324 8 99.0 Highly correlated
14 ZKSCAN1 7 160.0 Weakly correlated
15 ZNF18 7 160.0 Weakly correlated
16 ZNF257 7 0.0 Weakly correlated
17 ZNF506 6 28.9 Weakly correlated
18 ZNF274 6 99.0 Highly correlated
19 ZNF251 6 94.0 Moderately correlated
20 ZKSCAN8 5 160.0 Weakly correlated
21 ZNF479 5 6.4 Weakly correlated
22 ZNF175 5 94.0 Moderately correlated
23 ZNF597 5 94.0 Moderately correlated
24 ZNF705B 4 28.9 Weakly correlated
25 ZNF584 4 99.0 Highly correlated
26 ZIM3 4 87.0 Moderately correlated
27 ZNF101 4 43.0 Weakly correlated
28 ZNF701 4 28.9 Weakly correlated
29 ZNF778 4 74.0 Weakly correlated
30 ZNF610 3 28.9 Weakly correlated
31 ZNF707 3 74.0 Weakly correlated
32 ZNF723 3 15.2 Weakly correlated
33 ZNF75D 3 94.0 Moderately correlated
34 ZFP57 3 87.0 Moderately correlated
35 ZNF549 3 87.0 Moderately correlated
36 ZNF534 3 19.6 Weakly correlated
37 ZNF528 3 43.0 Weakly correlated
38 ZNF519 3 19.6 Weakly correlated
39 ZFP69B 3 99.0 Highly correlated
40 ZNF197 3 99.0 Highly correlated
41 ZNF320 3 28.9 Weakly correlated
42 ZNF486 2 8.6 Weakly correlated
43 ZNF735 2 28.9 Weakly correlated
44 ZNF248 2 99.0 Highly correlated
45 ZNF682 2 28.9 Weakly correlated
46 ZNF273 2 28.9 Weakly correlated
47 ZNF28 2 28.9 Weakly correlated
48 ZNF347 2 43.0 Weakly correlated
49 ZNF705D 1 28.9 Weakly correlated
50 ZNF92 1 28.9 Weakly correlated
51 ZNF91 1 6.0 Weakly correlated
52 ZNF8 1 99.0 Highly correlated
53 ZNF84 1 99.0 Highly correlated
54 ZNF845 1 28.9 Weakly correlated
55 ZNF808 1 19.6 Weakly correlated
56 ZNF471 1 94.0 Moderately correlated
57 ZIK1 1 87.0 Moderately correlated
58 ZNF12 1 99.0 Highly correlated
59 ZNF140 1 99.0 Highly correlated
60 ZNF547 1 74.0 Weakly correlated
61 ZNF141 1 43.0 Weakly correlated
62 ZNF468 1 28.9 Weakly correlated
63 ZNF202 1 160.0 Weakly correlated
64 ZNF44 1 43.0 Weakly correlated
65 ZNF684 1 99.0 Highly correlated
66 ZNF429 1 28.9 Weakly correlated
67 ZNF425 1 94.0 Moderately correlated
68 ZNF585A 1 99.0 Highly correlated
69 ZNF677 1 99.0 Highly correlated
70 ZNF669 1 43.0 Weakly correlated
71 ZNF627 1 74.0 Weakly correlated
72 ZNF616 1 43.0 Weakly correlated
73 ZNF317 1 99.0 Highly correlated
74 ZNF605 1 99.0 Highly correlated
75 ZNF587 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 7 180.0 Weakly correlated
2 ZNF793 5 99.0 Highly correlated
3 ZNF479 4 6.4 Weakly correlated
4 ZNF506 4 28.9 Weakly correlated
5 ZNF101 3 43.0 Weakly correlated
6 ZFP37 3 99.0 Highly correlated
7 ZNF347 2 43.0 Weakly correlated
8 ZNF554 2 99.0 Highly correlated
9 ZNF680 2 28.9 Weakly correlated
10 ZNF257 2 0.0 Weakly correlated
11 ZNF320 1 28.9 Weakly correlated
12 ZNF778 1 74.0 Weakly correlated
13 ZNF627 1 74.0 Weakly correlated
14 ZNF723 1 15.2 Weakly correlated
15 ZKSCAN8 1 160.0 Weakly correlated
16 ZNF2 1 99.0 Highly correlated
17 ZNF610 1 28.9 Weakly correlated
18 ZNF766 1 43.0 Weakly correlated
19 ZNF534 1 19.6 Weakly correlated
20 ZNF75D 1 94.0 Moderately correlated
21 ZNF18 1 160.0 Weakly correlated
22 ZNF735 1 28.9 Weakly correlated
23 ZNF684 1 99.0 Highly correlated
24 ZNF682 1 28.9 Weakly correlated
25 ZNF679 1 28.9 Weakly correlated
26 ZNF324 1 99.0 Highly correlated
27 ZNF705B 1 28.9 Weakly correlated
28 ZNF587 1 28.9 Weakly correlated
29 ZNF44 1 43.0 Weakly correlated
30 ZNF549 1 87.0 Moderately correlated
31 ZNF471 1 94.0 Moderately correlated
32 ZNF274 1 99.0 Highly correlated
33 ZNF141 1 43.0 Weakly correlated
34 ZIM3 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated