ZRdb KZFP & Repeats
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LTR_MER74C

  • Name
    MER74C
  • Repbase
    MER74C
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000927
Description :

MER74C has 5 bp TSDs. It is a flanking LTR of HERVL74. Note that MERstands for MEdium Reiteration frequency interspersed repeat. As such,MERs as a group are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttttttaaaatgctgtcttgacccagttttgaggccctggctagaggccggtcagttccccttcttgagcagctgattaagtccacaccccaaccacttcccttatcgggctctcacactccgggnccactatgcacccgccctaatcgccccagggccaggtaccagacaactagggacagcccctatgccccggagcccgcgaaattattcaaattagccaatccacagggagcccgngaaacctagctaaccccaccccgcttgccatacataagctgccccctacagctccagcttgctgttaccctgtccccgggtgcaaccccctgtgtggccctgcctggcagccttctctcgtttggagctgtaagtaacaaagagttctgcctttcatctatccgagtgtcantgtgttgtgtcccgccatcaaaagaatctttaaatcttataaaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 12 43.0 Weakly correlated
2 ZIM3 7 87.0 Moderately correlated
3 ZNF382 7 99.0 Highly correlated
4 ZNF589 7 28.9 Weakly correlated
5 ZNF197 7 99.0 Highly correlated
6 ZNF175 6 94.0 Moderately correlated
7 ZNF680 5 28.9 Weakly correlated
8 ZNF584 5 99.0 Highly correlated
9 ZKSCAN8 5 160.0 Weakly correlated
10 ZKSCAN1 5 160.0 Weakly correlated
11 ZNF274 4 99.0 Highly correlated
12 ZNF394 4 99.0 Highly correlated
13 ZNF18 3 160.0 Weakly correlated
14 ZNF585B 3 99.0 Highly correlated
15 ZNF2 3 99.0 Highly correlated
16 ZNF549 3 87.0 Moderately correlated
17 ZNF479 2 6.4 Weakly correlated
18 ZNF597 2 94.0 Moderately correlated
19 ZNF723 2 15.2 Weakly correlated
20 ZFP37 2 99.0 Highly correlated
21 ZNF28 2 28.9 Weakly correlated
22 ZNF263 2 180.0 Weakly correlated
23 ZNF786 1 99.0 Highly correlated
24 ZNF547 1 74.0 Weakly correlated
25 ZNF780A 1 43.0 Weakly correlated
26 ZNF141 1 43.0 Weakly correlated
27 ZNF160 1 74.0 Weakly correlated
28 ZNF701 1 28.9 Weakly correlated
29 ZNF695 1 28.9 Weakly correlated
30 ZNF682 1 28.9 Weakly correlated
31 ZNF251 1 94.0 Moderately correlated
32 ZNF675 1 8.6 Weakly correlated
33 ZNF671 1 94.0 Moderately correlated
34 ZNF649 1 28.9 Weakly correlated
35 ZNF605 1 99.0 Highly correlated
36 ZNF264 1 99.0 Highly correlated
37 ZNF425 1 94.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 5 87.0 Moderately correlated
2 ZNF597 2 94.0 Moderately correlated
3 ZNF197 2 99.0 Highly correlated
4 ZNF589 2 28.9 Weakly correlated
5 ZNF141 1 43.0 Weakly correlated
6 ZNF28 1 28.9 Weakly correlated
7 ZNF175 1 94.0 Moderately correlated
8 ZNF671 1 94.0 Moderately correlated
9 ZNF680 1 28.9 Weakly correlated
10 ZNF695 1 28.9 Weakly correlated
11 ZNF479 1 6.4 Weakly correlated
12 ZNF584 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats