ZRdb KZFP & Repeats
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LTR_MER74B

  • Name
    MER74B
  • Repbase
    MER74B
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000926
Description :

MER74B has 5 bp TSDs. It is a flanking LTR of HERVL74. Note that MERstands for MEdium Reiteration frequency interspersed repeat. As such,MERs as a group are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttttcttagattctgtatttgtctatttggcatccattcatcacagggccaattgtattaatcatgttttttattttctgtatttttgatgctttgacatcttggggccttgctggccngggagagactgcccctcccagggctagccaattcctagagatagcaaaggactcgcctgggagcacgcctttcatatgcaaaccaaccaatccagagcccatacccccaaccacctcctttatctaactctcacacnccaagccaatattccccctgccctaaatcaccccagggccaggtaccaggcaactagggaccacccctatagcccagagcccgccggaattattcaaactagccaatcctaagcctgcttaccctgccctgcccgttccttcccgcggaaaccccaataaaggctctggcccangctttcccctcgctccttctgcctcctgaccgaccctggtgcttccccgtgtggccctgcgtggcgtggcgtgcccccttctcttgggaactgtgagnataataaactntcttttcaatggcagtcgtctcctggtctgtcggccttaccatacctgantaaaacaaaatcccgggtacattttaaaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 37 43.0 Weakly correlated
2 ZNF382 17 99.0 Highly correlated
3 ZKSCAN1 17 160.0 Weakly correlated
4 ZNF100 14 28.9 Weakly correlated
5 ZNF589 13 28.9 Weakly correlated
6 ZKSCAN8 13 160.0 Weakly correlated
7 ZNF394 12 99.0 Highly correlated
8 ZNF558 11 99.0 Highly correlated
9 ZNF175 11 94.0 Moderately correlated
10 ZNF18 11 160.0 Weakly correlated
11 ZNF534 10 19.6 Weakly correlated
12 ZNF554 9 99.0 Highly correlated
13 ZNF263 9 180.0 Weakly correlated
14 ZNF584 8 99.0 Highly correlated
15 ZNF197 8 99.0 Highly correlated
16 ZNF274 8 99.0 Highly correlated
17 ZNF680 8 28.9 Weakly correlated
18 ZNF257 6 0.0 Weakly correlated
19 ZNF597 5 94.0 Moderately correlated
20 ZNF320 5 28.9 Weakly correlated
21 ZNF679 5 28.9 Weakly correlated
22 ZFP37 4 99.0 Highly correlated
23 ZFP57 4 87.0 Moderately correlated
24 ZNF2 4 99.0 Highly correlated
25 ZNF705B 4 28.9 Weakly correlated
26 ZNF705D 3 28.9 Weakly correlated
27 ZNF793 3 99.0 Highly correlated
28 ZNF808 3 19.6 Weakly correlated
29 ZNF479 3 6.4 Weakly correlated
30 ZIM3 3 87.0 Moderately correlated
31 ZNF486 3 8.6 Weakly correlated
32 ZNF75D 2 94.0 Moderately correlated
33 ZNF485 2 94.0 Moderately correlated
34 ZKSCAN5 2 160.0 Weakly correlated
35 ZNF101 2 43.0 Weakly correlated
36 ZNF317 2 99.0 Highly correlated
37 ZNF506 2 28.9 Weakly correlated
38 ZNF28 1 28.9 Weakly correlated
39 ZNF93 1 8.6 Weakly correlated
40 ZNF786 1 99.0 Highly correlated
41 ZNF780A 1 43.0 Weakly correlated
42 ZNF778 1 74.0 Weakly correlated
43 ZNF133 1 99.0 Highly correlated
44 ZNF140 1 99.0 Highly correlated
45 ZNF736 1 43.0 Weakly correlated
46 ZNF735 1 28.9 Weakly correlated
47 ZNF723 1 15.2 Weakly correlated
48 ZNF169 1 94.0 Moderately correlated
49 ZNF251 1 94.0 Moderately correlated
50 ZNF695 1 28.9 Weakly correlated
51 ZNF677 1 99.0 Highly correlated
52 ZNF674 1 99.0 Highly correlated
53 ZNF610 1 28.9 Weakly correlated
54 ZNF334 1 99.0 Highly correlated
55 ZNF33A 1 99.0 Highly correlated
56 ZNF425 1 94.0 Moderately correlated
57 ZNF560 1 43.0 Weakly correlated
58 ZNF429 1 28.9 Weakly correlated
59 ZNF557 1 15.2 Weakly correlated
60 ZNF441 1 43.0 Weakly correlated
61 ZNF480 1 43.0 Weakly correlated
62 ZNF528 1 43.0 Weakly correlated
63 ZNF519 1 19.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF197 7 99.0 Highly correlated
2 ZNF175 6 94.0 Moderately correlated
3 ZNF534 6 19.6 Weakly correlated
4 ZNF589 6 28.9 Weakly correlated
5 ZNF597 4 94.0 Moderately correlated
6 ZNF584 4 99.0 Highly correlated
7 ZNF257 4 0.0 Weakly correlated
8 ZNF263 3 180.0 Weakly correlated
9 ZIM3 2 87.0 Moderately correlated
10 ZNF766 2 43.0 Weakly correlated
11 ZNF320 2 28.9 Weakly correlated
12 ZNF528 1 43.0 Weakly correlated
13 ZFP57 1 87.0 Moderately correlated
14 ZKSCAN5 1 160.0 Weakly correlated
15 ZNF485 1 94.0 Moderately correlated
16 ZNF677 1 99.0 Highly correlated
17 ZNF560 1 43.0 Weakly correlated
18 ZNF479 1 6.4 Weakly correlated
19 ZNF429 1 28.9 Weakly correlated
20 ZNF140 1 99.0 Highly correlated
21 ZNF723 1 15.2 Weakly correlated
22 ZNF480 1 43.0 Weakly correlated
23 ZNF679 1 28.9 Weakly correlated
24 ZNF486 1 8.6 Weakly correlated
25 ZNF680 1 28.9 Weakly correlated
26 ZNF75D 1 94.0 Moderately correlated
27 ZNF674 1 99.0 Highly correlated
28 ZNF382 1 99.0 Highly correlated
29 ZKSCAN8 1 160.0 Weakly correlated
30 ZNF554 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Moderately correlated
2 ZNF197 99.0 Highly correlated
3 ZNF589 28.9 Weakly correlated