ZRdb KZFP & Repeats
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LTR_MER74A

  • Name
    MER74A
  • Repbase
    MER74A
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000925
Description :

MER74A has 5 bp TSDs. It is a flanking LTR of HERVL74. Note that MERstands for MEdium Reiteration frequency interspersed repeat. As such,MERs as a group are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtattaaccatgtcttttattttctgtattcttgatgctttgacatctggggccttgctgaccctggagggactgcccctcccagggctagccaattcctagagatagtaaacgactcgcccgngagcgcgcctttcatatgcaaaccaaccaatccagagcccacacccccaaccacctcctttatcgggctctcacactccgggccactatccccctgccctaatcaccccagggccaggtaccagacaactagggacagcccctatgccccagagcccgctgaaattattcaaactagccaatcctaagcctgcttaccctgcctcgcccgttccttcccgcggaaaccacaataaaggctcttgcccacgttttcccctcgctccctctgcctcctgaccgaccctggtgcttccccgtgtggccccncgtggcgtggcgtgccccctcctcttggganctgtgagtaacaaactatcttttcaatggcagtcgtctcctgatctgttggcctcaccatacctgaataataataaaacctacattttaaaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 55 99.0 Highly correlated
2 ZNF534 49 19.6 Weakly correlated
3 ZNF766 36 43.0 Weakly correlated
4 ZNF263 31 180.0 Weakly correlated
5 ZNF680 27 28.9 Weakly correlated
6 ZNF597 21 94.0 Moderately correlated
7 ZNF394 18 99.0 Highly correlated
8 ZNF705B 16 28.9 Weakly correlated
9 ZNF589 15 28.9 Weakly correlated
10 ZNF257 15 0.0 Weakly correlated
11 ZNF175 15 94.0 Moderately correlated
12 ZNF274 14 99.0 Highly correlated
13 ZFP37 13 99.0 Highly correlated
14 ZKSCAN8 12 160.0 Weakly correlated
15 ZNF584 12 99.0 Highly correlated
16 ZNF320 12 28.9 Weakly correlated
17 ZNF317 12 99.0 Highly correlated
18 ZNF2 12 99.0 Highly correlated
19 ZKSCAN1 12 160.0 Weakly correlated
20 ZNF554 12 99.0 Highly correlated
21 ZNF18 10 160.0 Weakly correlated
22 ZNF479 10 6.4 Weakly correlated
23 ZNF679 10 28.9 Weakly correlated
24 ZNF75D 9 94.0 Moderately correlated
25 ZNF101 9 43.0 Weakly correlated
26 ZNF197 9 99.0 Highly correlated
27 ZNF701 9 28.9 Weakly correlated
28 ZNF490 8 43.0 Weakly correlated
29 ZFP69B 7 99.0 Highly correlated
30 ZNF705D 6 28.9 Weakly correlated
31 ZNF793 6 99.0 Highly correlated
32 ZNF324 6 99.0 Highly correlated
33 ZNF558 5 99.0 Highly correlated
34 ZIM3 4 87.0 Moderately correlated
35 ZNF610 4 28.9 Weakly correlated
36 ZNF28 4 28.9 Weakly correlated
37 ZNF792 4 94.0 Moderately correlated
38 ZNF547 4 74.0 Weakly correlated
39 ZNF485 3 94.0 Moderately correlated
40 ZNF786 3 99.0 Highly correlated
41 ZNF92 3 28.9 Weakly correlated
42 ZNF264 3 99.0 Highly correlated
43 ZNF141 3 43.0 Weakly correlated
44 ZFP28 2 99.0 Highly correlated
45 ZNF695 2 28.9 Weakly correlated
46 ZNF8 2 99.0 Highly correlated
47 ZNF563 2 28.9 Weakly correlated
48 ZNF707 2 74.0 Weakly correlated
49 ZNF823 2 43.0 Weakly correlated
50 ZNF723 2 15.2 Weakly correlated
51 ZNF93 2 8.6 Weakly correlated
52 ZNF468 2 28.9 Weakly correlated
53 ZNF140 2 99.0 Highly correlated
54 ZNF169 2 94.0 Moderately correlated
55 ZNF429 2 28.9 Weakly correlated
56 ZNF189 2 99.0 Highly correlated
57 ZKSCAN5 2 160.0 Weakly correlated
58 ZNF480 2 43.0 Weakly correlated
59 ZNF483 2 99.0 Highly correlated
60 ZNF486 2 8.6 Weakly correlated
61 ZNF528 2 43.0 Weakly correlated
62 ZNF506 2 28.9 Weakly correlated
63 ZNF519 2 19.6 Weakly correlated
64 ZFP57 1 87.0 Moderately correlated
65 ZNF735 1 28.9 Weakly correlated
66 ZNF202 1 160.0 Weakly correlated
67 ZNF765 1 8.6 Weakly correlated
68 ZNF778 1 74.0 Weakly correlated
69 ZNF136 1 74.0 Weakly correlated
70 ZNF799 1 43.0 Weakly correlated
71 ZNF808 1 19.6 Weakly correlated
72 ZNF816 1 28.9 Weakly correlated
73 ZNF133 1 99.0 Highly correlated
74 ZNF84 1 99.0 Highly correlated
75 ZNF91 1 6.0 Weakly correlated
76 ZFP69 1 99.0 Highly correlated
77 ZNF671 1 94.0 Moderately correlated
78 ZNF549 1 87.0 Moderately correlated
79 ZNF566 1 99.0 Highly correlated
80 ZNF585A 1 99.0 Highly correlated
81 ZNF585B 1 99.0 Highly correlated
82 ZNF587 1 28.9 Weakly correlated
83 ZNF436 1 180.0 Weakly correlated
84 ZNF417 1 28.9 Weakly correlated
85 ZNF616 1 43.0 Weakly correlated
86 ZNF251 1 94.0 Moderately correlated
87 ZNF383 1 99.0 Highly correlated
88 ZNF33A 1 99.0 Highly correlated
89 ZNF682 1 28.9 Weakly correlated
90 ZNF337 1 43.0 Weakly correlated
91 ZNF334 1 99.0 Highly correlated
92 ZNF30 1 94.0 Moderately correlated
93 ZNF283 1 99.0 Highly correlated
94 ZNF282 1 319.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 35 19.6 Weakly correlated
2 ZNF597 17 94.0 Moderately correlated
3 ZNF263 10 180.0 Weakly correlated
4 ZNF257 7 0.0 Weakly correlated
5 ZNF320 6 28.9 Weakly correlated
6 ZNF680 5 28.9 Weakly correlated
7 ZNF75D 4 94.0 Moderately correlated
8 ZNF766 3 43.0 Weakly correlated
9 ZNF793 3 99.0 Highly correlated
10 ZNF490 3 43.0 Weakly correlated
11 ZNF382 3 99.0 Highly correlated
12 ZNF141 3 43.0 Weakly correlated
13 ZNF479 2 6.4 Weakly correlated
14 ZNF140 2 99.0 Highly correlated
15 ZNF101 2 43.0 Weakly correlated
16 ZFP37 2 99.0 Highly correlated
17 ZNF28 2 28.9 Weakly correlated
18 ZIM3 2 87.0 Moderately correlated
19 ZNF324 2 99.0 Highly correlated
20 ZNF468 2 28.9 Weakly correlated
21 ZNF485 2 94.0 Moderately correlated
22 ZNF707 1 74.0 Weakly correlated
23 ZNF417 1 28.9 Weakly correlated
24 ZNF283 1 99.0 Highly correlated
25 ZNF701 1 28.9 Weakly correlated
26 ZNF587 1 28.9 Weakly correlated
27 ZNF18 1 160.0 Weakly correlated
28 ZNF317 1 99.0 Highly correlated
29 ZNF735 1 28.9 Weakly correlated
30 ZNF264 1 99.0 Highly correlated
31 ZNF792 1 94.0 Moderately correlated
32 ZNF202 1 160.0 Weakly correlated
33 ZFP69B 1 99.0 Highly correlated
34 ZKSCAN1 1 160.0 Weakly correlated
35 ZKSCAN5 1 160.0 Weakly correlated
36 ZNF189 1 99.0 Highly correlated
37 ZNF506 1 28.9 Weakly correlated
38 ZNF589 1 28.9 Weakly correlated
39 ZNF679 1 28.9 Weakly correlated
40 ZNF705B 1 28.9 Weakly correlated
41 ZNF584 1 99.0 Highly correlated
42 ZNF429 1 28.9 Weakly correlated
43 ZNF528 1 43.0 Weakly correlated
44 ZNF197 1 99.0 Highly correlated
45 ZNF282 1 319.0 Weakly correlated
46 ZNF383 1 99.0 Highly correlated
47 ZNF671 1 94.0 Moderately correlated
48 ZNF705D 1 28.9 Weakly correlated
49 ZNF554 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF257 0.0 Weakly correlated
2 ZNF534 19.6 Weakly correlated
3 ZNF597 94.0 Moderately correlated