ZRdb KZFP & Repeats
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LTR_MER73

  • Name
    MER73
  • Repbase
    MER73
  • Type
    LTR
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000924
Description :

MER73 has 5 bp TSDs, and is related to MER54. The originally reportedorientation has been reversed. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtcataaatttgtttaatatagttgctgcctcggcatccatttttaggcctgacataagttgtttgaaacccagtcgtaccccgtcacctttggcctagttaaaacttcccctccccgtgtggttgtttgcgatatagcccgcttgttcctcatcccactgacccaaaacccaacacaccccacagctgctgaccacgataaaacctaatggtcaacaccagagtcatgtaaataagttccccccttcgcgcgtgttttctttaaactagccaatccacaacccccgcgggaaagcctaagggataacgcccatggaccttaataaaggcatagtcccacaggctctctcccctctctctcgctccccacccgctggttgagctccctgccgcctccggacttcccgtcggcctcccgtcggcacccctaacctctctgggacctgtgagtaataaatttcttctgtttcatgcattttggtttcacctcctcattgtgtctcacctgacnnacacacccgaacctaactttccccccggtcagggctctcctagagagtggctatcttggcttatggccactctcaagagagagacctcaagaccaaattagaaagaaaccataacaataaaaatcacaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 24 43.0 Weakly correlated
2 ZNF382 16 99.0 Weakly correlated
3 ZNF597 14 94.0 Weakly correlated
4 ZNF589 11 28.9 Weakly correlated
5 ZNF175 10 94.0 Weakly correlated
6 ZNF479 8 6.4 Weakly correlated
7 ZNF584 7 99.0 Weakly correlated
8 ZNF705D 7 28.9 Weakly correlated
9 ZNF263 7 180.0 Weakly correlated
10 ZKSCAN8 6 160.0 Weakly correlated
11 ZNF320 6 28.9 Weakly correlated
12 ZFP37 5 99.0 Weakly correlated
13 ZNF705B 5 28.9 Weakly correlated
14 ZNF197 4 99.0 Weakly correlated
15 ZNF679 4 28.9 Weakly correlated
16 ZKSCAN1 4 160.0 Weakly correlated
17 ZNF610 4 28.9 Weakly correlated
18 ZNF18 3 160.0 Weakly correlated
19 ZIM3 2 87.0 Highly correlated
20 ZNF558 2 99.0 Weakly correlated
21 ZNF324 2 99.0 Weakly correlated
22 ZFP28 2 99.0 Weakly correlated
23 ZNF394 2 99.0 Weakly correlated
24 ZNF2 2 99.0 Weakly correlated
25 ZNF169 2 94.0 Weakly correlated
26 ZNF701 1 28.9 Weakly correlated
27 ZNF778 1 74.0 Moderately correlated
28 ZNF614 1 99.0 Weakly correlated
29 ZNF75D 1 94.0 Weakly correlated
30 ZNF723 1 15.2 Weakly correlated
31 ZNF735 1 28.9 Weakly correlated
32 ZNF567 1 99.0 Weakly correlated
33 ZNF559 1 74.0 Moderately correlated
34 ZNF534 1 19.6 Weakly correlated
35 ZNF490 1 43.0 Weakly correlated
36 ZNF480 1 43.0 Weakly correlated
37 ZNF441 1 43.0 Weakly correlated
38 ZNF429 1 28.9 Weakly correlated
39 ZNF425 1 94.0 Weakly correlated
40 ZNF418 1 43.0 Weakly correlated
41 ZNF317 1 99.0 Weakly correlated
42 ZNF304 1 99.0 Weakly correlated
43 ZNF274 1 99.0 Weakly correlated
44 ZNF257 1 0.0 Weakly correlated
45 ZNF251 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 8 6.4 Weakly correlated
2 ZNF320 4 28.9 Weakly correlated
3 ZNF597 4 94.0 Weakly correlated
4 ZNF589 2 28.9 Weakly correlated
5 ZNF679 2 28.9 Weakly correlated
6 ZNF584 2 99.0 Weakly correlated
7 ZNF705D 1 28.9 Weakly correlated
8 ZNF197 1 99.0 Weakly correlated
9 ZNF175 1 94.0 Weakly correlated
10 ZNF735 1 28.9 Weakly correlated
11 ZNF610 1 28.9 Weakly correlated
12 ZNF169 1 94.0 Weakly correlated
13 ZNF534 1 19.6 Weakly correlated
14 ZNF75D 1 94.0 Weakly correlated
15 ZNF766 1 43.0 Weakly correlated
16 ZNF251 1 94.0 Weakly correlated
17 ZNF705B 1 28.9 Weakly correlated
18 ZNF558 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF479 6.4 Weakly correlated