ZRdb KZFP & Repeats
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LTR_MER72B

  • Name
    MER72B
  • Repbase
    MER72B
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000923
Description :

MER72 is similar to MER49 & LTR59. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagaaataaaaataaaatcctaagccccccaaccgactgaacggaccccctcttggnccaaggggaccccagagaaaccttaaaaactgagttnncccggccatgacgggacgggaggtcggacacgcctcagtatgccccttccttattaacctttaaccagaattctttcctaaggagtaagcagaaaccagctctggaaaacaagaaacggacgactcattcctttatcgcctttagccaatcatctgaggccgcgaccggactccccctccctctttgcagtttcgacgtgacagctcaccagtttcacaatgcatcccttcctaaaaactgaccaccatctccggaccggttttggccgactcgcggaggatgcgcagtgagggttttcgtgtccnnntctgcttcaccttttgacgtcagagggccgaaaactccaccctcggatcatgctaacgccgccattttttgaacatgcgacccatgaagaggcatgaagctcaattgcgcatgcgcatgtttctcctttcataaatattcatgactcctcctatagcttattgaatatgtatatttagccaccccactcagcataaattcctgttccctttacccctccctcgaagtgcttcgctctcggcttctgccggaggctacgcttcccagcctgcgggatggccagcctgcaggctgcaaccctttatgagaaataaagctctcctttccaaatttatgaacctcgtgattcttcagttgacatacca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF418 30 43.0 Highly correlated
2 ZNF766 15 43.0 Highly correlated
3 ZNF382 8 99.0 Weakly correlated
4 ZNF547 6 74.0 Weakly correlated
5 ZNF589 5 28.9 Moderately correlated
6 ZNF597 4 94.0 Weakly correlated
7 ZNF175 4 94.0 Weakly correlated
8 ZNF197 4 99.0 Weakly correlated
9 ZNF584 4 99.0 Weakly correlated
10 ZNF679 3 28.9 Moderately correlated
11 ZKSCAN1 3 160.0 Weakly correlated
12 ZNF2 3 99.0 Weakly correlated
13 ZNF394 3 99.0 Weakly correlated
14 ZFP37 3 99.0 Weakly correlated
15 ZNF723 2 15.2 Weakly correlated
16 ZFP69B 2 99.0 Weakly correlated
17 ZNF558 2 99.0 Weakly correlated
18 ZNF75D 2 94.0 Weakly correlated
19 ZNF44 2 43.0 Highly correlated
20 ZNF317 2 99.0 Weakly correlated
21 ZNF28 2 28.9 Moderately correlated
22 ZKSCAN8 2 160.0 Weakly correlated
23 ZNF563 1 28.9 Moderately correlated
24 ZNF823 1 43.0 Highly correlated
25 ZIM3 1 87.0 Weakly correlated
26 ZNF101 1 43.0 Highly correlated
27 ZNF705B 1 28.9 Moderately correlated
28 ZNF701 1 28.9 Moderately correlated
29 ZNF133 1 99.0 Weakly correlated
30 ZNF140 1 99.0 Weakly correlated
31 ZNF18 1 160.0 Weakly correlated
32 ZNF585A 1 99.0 Weakly correlated
33 ZNF263 1 180.0 Weakly correlated
34 ZNF565 1 99.0 Weakly correlated
35 ZNF343 1 74.0 Weakly correlated
36 ZNF26 1 99.0 Weakly correlated
37 ZNF554 1 99.0 Weakly correlated
38 ZNF549 1 87.0 Weakly correlated
39 ZNF273 1 28.9 Moderately correlated
40 ZNF506 1 28.9 Moderately correlated
41 ZNF479 1 6.4 Weakly correlated
42 ZNF468 1 28.9 Moderately correlated
43 ZNF274 1 99.0 Weakly correlated
44 ZNF324 1 99.0 Weakly correlated
45 ZNF350 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF418 16 43.0 Highly correlated
2 ZNF584 2 99.0 Weakly correlated
3 ZNF723 2 15.2 Weakly correlated
4 ZNF197 2 99.0 Weakly correlated
5 ZNF589 1 28.9 Moderately correlated
6 ZNF75D 1 94.0 Weakly correlated
7 ZNF585A 1 99.0 Weakly correlated
8 ZNF382 1 99.0 Weakly correlated
9 ZNF317 1 99.0 Weakly correlated
10 ZNF2 1 99.0 Weakly correlated
11 ZNF468 1 28.9 Moderately correlated
12 ZNF766 1 43.0 Highly correlated
13 ZIM3 1 87.0 Weakly correlated
14 ZNF563 1 28.9 Moderately correlated
15 ZNF554 1 99.0 Weakly correlated
16 ZNF175 1 94.0 Weakly correlated
17 ZNF133 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF418 43.0 Highly correlated