ZRdb KZFP & Repeats
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LTR_MER72

  • Name
    MER72
  • Repbase
    MER72
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000922
Description :

MER72 is similar to MER49 & LTR59. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagaaataaaaataaaatcctaagccccccaaccgactgaacggaccccctcttggccaaggggaccccagagnaaccttgaaaactgagttctcggccatgacgggatgggaggtcggacacgcctcgttataccccctccctcgctaaccgccattaggctttcttccctaagggctaaacagaaaccagccctttcgaaagactccaccgctgatatcaaccaaccgcctgacgctgcccctcccttttgcggtttcgacanaacaaccgaccagcattccttcctgataagagaccaccgaccacggagtggttctggccagtctacggaggatgcgcagtgagggttttcgtgtcctctgcttcaccttttgacgtcagagggccgaaaactccaccctcggatcatgctaacgccgccattttttgnacatgggacccatgaaggggcatgaagctcaattgcgcatgcgcacgtttctcctttcataaatattcatgactcctcctatagcttattgaatatgtatattcggccaccccgctcagcataaattcctgttccctttgcccctccctcgaagtgtctgtttctggcttctggccggaggctacgcttcccagcctgtcagaatggccaccctgcaggctgcaaccctttatgagaaataaagctctcctttccaaatttatgaacctcgtcattcttcagttgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF418 246 43.0 Highly correlated
2 ZNF766 98 43.0 Highly correlated
3 ZNF589 46 28.9 Moderately correlated
4 ZNF197 45 99.0 Weakly correlated
5 ZNF175 39 94.0 Weakly correlated
6 ZNF584 35 99.0 Weakly correlated
7 ZKSCAN8 33 160.0 Weakly correlated
8 ZNF382 30 99.0 Weakly correlated
9 ZKSCAN1 26 160.0 Weakly correlated
10 ZNF18 15 160.0 Weakly correlated
11 ZNF394 13 99.0 Weakly correlated
12 ZNF263 11 180.0 Weakly correlated
13 ZFP37 9 99.0 Weakly correlated
14 ZNF549 8 87.0 Weakly correlated
15 ZNF610 8 28.9 Moderately correlated
16 ZIM3 7 87.0 Weakly correlated
17 ZNF705B 6 28.9 Moderately correlated
18 ZNF468 6 28.9 Moderately correlated
19 ZNF679 5 28.9 Moderately correlated
20 ZNF324 5 99.0 Weakly correlated
21 ZNF547 5 74.0 Weakly correlated
22 ZNF793 5 99.0 Weakly correlated
23 ZNF597 4 94.0 Weakly correlated
24 ZNF705D 4 28.9 Moderately correlated
25 ZNF317 4 99.0 Weakly correlated
26 ZNF680 4 28.9 Moderately correlated
27 ZFP57 3 87.0 Weakly correlated
28 ZNF723 3 15.2 Weakly correlated
29 ZNF486 3 8.6 Weakly correlated
30 ZNF350 3 99.0 Weakly correlated
31 ZNF251 3 94.0 Weakly correlated
32 ZNF28 2 28.9 Moderately correlated
33 ZNF92 2 28.9 Moderately correlated
34 ZNF778 2 74.0 Weakly correlated
35 ZNF101 2 43.0 Highly correlated
36 ZNF140 2 99.0 Weakly correlated
37 ZNF682 2 28.9 Moderately correlated
38 ZNF264 2 99.0 Weakly correlated
39 ZNF274 2 99.0 Weakly correlated
40 ZNF284 2 43.0 Highly correlated
41 ZNF441 2 43.0 Highly correlated
42 ZNF2 2 99.0 Weakly correlated
43 ZNF534 2 19.6 Weakly correlated
44 ZNF479 2 6.4 Weakly correlated
45 ZNF554 2 99.0 Weakly correlated
46 ZNF506 1 28.9 Moderately correlated
47 ZNF44 1 43.0 Highly correlated
48 ZNF84 1 99.0 Weakly correlated
49 ZNF823 1 43.0 Highly correlated
50 ZNF816 1 28.9 Moderately correlated
51 ZFP69B 1 99.0 Weakly correlated
52 ZNF789 1 99.0 Weakly correlated
53 ZNF780A 1 43.0 Highly correlated
54 ZNF417 1 28.9 Moderately correlated
55 ZNF124 1 43.0 Highly correlated
56 ZNF133 1 99.0 Weakly correlated
57 ZNF510 1 99.0 Weakly correlated
58 ZNF519 1 19.6 Weakly correlated
59 ZNF528 1 43.0 Highly correlated
60 ZNF669 1 43.0 Highly correlated
61 ZNF530 1 28.9 Moderately correlated
62 ZNF331 1 94.0 Weakly correlated
63 ZNF585A 1 99.0 Weakly correlated
64 ZNF30 1 94.0 Weakly correlated
65 ZNF563 1 28.9 Moderately correlated
66 ZNF558 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF418 148 43.0 Highly correlated
2 ZNF766 24 43.0 Highly correlated
3 ZNF197 17 99.0 Weakly correlated
4 ZNF589 16 28.9 Moderately correlated
5 ZNF584 15 99.0 Weakly correlated
6 ZNF175 13 94.0 Weakly correlated
7 ZNF468 6 28.9 Moderately correlated
8 ZIM3 5 87.0 Weakly correlated
9 ZKSCAN1 4 160.0 Weakly correlated
10 ZNF549 3 87.0 Weakly correlated
11 ZNF680 2 28.9 Moderately correlated
12 ZNF382 2 99.0 Weakly correlated
13 ZNF597 2 94.0 Weakly correlated
14 ZNF534 2 19.6 Weakly correlated
15 ZNF479 2 6.4 Weakly correlated
16 ZFP57 1 87.0 Weakly correlated
17 ZNF284 1 43.0 Highly correlated
18 ZNF723 1 15.2 Weakly correlated
19 ZKSCAN8 1 160.0 Weakly correlated
20 ZNF780A 1 43.0 Highly correlated
21 ZNF350 1 99.0 Weakly correlated
22 ZNF585A 1 99.0 Weakly correlated
23 ZNF133 1 99.0 Weakly correlated
24 ZNF793 1 99.0 Weakly correlated
25 ZNF610 1 28.9 Moderately correlated
26 ZNF263 1 180.0 Weakly correlated
27 ZNF519 1 19.6 Weakly correlated
28 ZNF705B 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF197 99.0 Weakly correlated
3 ZNF418 43.0 Highly correlated
4 ZNF468 28.9 Moderately correlated
5 ZNF584 99.0 Weakly correlated
6 ZNF589 28.9 Moderately correlated
7 ZNF766 43.0 Highly correlated