ZRdb KZFP & Repeats
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LTR_MER70C

  • Name
    MER70C
  • Repbase
    MER70C
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000920
Description :

MER70C has 5 bp TSDs, and is only distantly related to the other MER70variants. Note that MER stands for MEdium Reiteration frequencyinterspersed repeat. As such, MERs as a group are a grab bag of DNAtransposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttgggaaaggcagtctcatgcgtgcagtctttcgacccccgctcggccgcataagaatgggccttgggcctggaacacttccttaccaagagataaagagccctcacagcctgtgctgggcttatcgccttgtgtgggaatatctttccctgtttcagactcaatgtgtactcctttgttctgcttaagcgtgtgcgtcatatggcacctggccaaccccactgctatatctgtcccctgcggggaggggacggggtccttctgctgcagcacaagaggaggcgnntgtgtgcntgcaggccaattgccctgcgtcggctgccgggagggacccgctggccatgggggaccgacgcccactactgaagctgatcttgctctgtctcttctctatgtgagtaaagcgttgttccatccagtgcttgactgcgttgtgttttccttggcgactccgataccaagatgcagtgggcagaagtgctcggacttctactcctggtaataggcaacagatgccacttgctcgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 7 99.0 Highly correlated
2 ZNF263 6 180.0 Weakly correlated
3 ZNF175 6 94.0 Moderately correlated
4 ZNF766 5 43.0 Weakly correlated
5 ZNF589 4 28.9 Weakly correlated
6 ZNF680 4 28.9 Weakly correlated
7 ZIM3 3 87.0 Moderately correlated
8 ZNF274 3 99.0 Highly correlated
9 ZNF534 3 19.6 Weakly correlated
10 ZNF197 3 99.0 Highly correlated
11 ZNF723 3 15.2 Weakly correlated
12 ZNF133 3 99.0 Highly correlated
13 ZNF584 3 99.0 Highly correlated
14 ZNF18 2 160.0 Weakly correlated
15 ZNF394 2 99.0 Highly correlated
16 ZNF679 1 28.9 Weakly correlated
17 ZNF92 1 28.9 Weakly correlated
18 ZNF674 1 99.0 Highly correlated
19 ZNF705B 1 28.9 Weakly correlated
20 ZNF705D 1 28.9 Weakly correlated
21 ZNF716 1 19.6 Weakly correlated
22 ZNF793 1 99.0 Highly correlated
23 ZNF823 1 43.0 Weakly correlated
24 ZNF84 1 99.0 Highly correlated
25 ZFP37 1 99.0 Highly correlated
26 ZNF597 1 94.0 Moderately correlated
27 ZNF549 1 87.0 Moderately correlated
28 ZNF468 1 28.9 Weakly correlated
29 ZNF429 1 28.9 Weakly correlated
30 ZNF264 1 99.0 Highly correlated
31 ZNF257 1 0.0 Weakly correlated
32 ZNF140 1 99.0 Highly correlated
33 ZNF136 1 74.0 Weakly correlated
34 ZNF114 1 28.9 Weakly correlated
35 ZNF101 1 43.0 Weakly correlated
36 ZKSCAN8 1 160.0 Weakly correlated
37 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF175 3 94.0 Moderately correlated
2 ZNF584 2 99.0 Highly correlated
3 ZNF197 2 99.0 Highly correlated
4 ZNF263 2 180.0 Weakly correlated
5 ZNF534 2 19.6 Weakly correlated
6 ZIM3 1 87.0 Moderately correlated
7 ZNF133 1 99.0 Highly correlated
8 ZNF793 1 99.0 Highly correlated
9 ZNF429 1 28.9 Weakly correlated
10 ZNF549 1 87.0 Moderately correlated
11 ZNF680 1 28.9 Weakly correlated
12 ZNF716 1 19.6 Weakly correlated
13 ZNF589 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats