ZRdb KZFP & Repeats
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LTR_MER70B

  • Name
    MER70B
  • Repbase
    MER70B
  • Type
    LTR
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000919
Description :

MER70B has been revised and its orientation reversed from its originalpresentation. It is associated with MER70-int, and has 5 bp TSDs. Notethat MER stands for MEdium Reiteration frequency interspersed repeat. Assuch, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgcaggacagttctccgggtggccttggaccgacccagttctcccccctttctcgcttgtagttctcaagaataactgtagaatgtgctgggaatgcaacatcctgagataaggaggaactgnccggaacagcccgggctctgttcccgtccctcctagaaacaggatgtcctncaacgctttagcccagcgagtcacgtngcccccggggtataaaacccagggcgggctgctttccggggtccctcagctgcggtgcaagtggggcacgcgcagacgagactccatccgccctgggcagctttcctgagccttgggggaccggctcgccatgaatcctaggcttctgttgtcccttgctgcctatctgtgagtaataaacctgcttcgcgtaacttgttgntgtgtgagtgttctgtctcaccggactcaggcaagtagtaaaantgcagcccaagatgcagtgggcngaagtgtttcggactcctattcctggtggttggcatagtgatgatctttgctatcctccacgcagtgggagtcctcccttgggattggtaattagtgaacctgcttca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF224 89 69.0 Weakly correlated
2 ZIM3 33 87.0 Highly correlated
3 ZNF263 10 180.0 Weakly correlated
4 ZNF766 9 43.0 Weakly correlated
5 ZFP57 8 87.0 Highly correlated
6 ZNF382 8 99.0 Weakly correlated
7 ZNF18 8 160.0 Weakly correlated
8 ZNF534 7 19.6 Weakly correlated
9 ZNF680 7 28.9 Weakly correlated
10 ZNF679 5 28.9 Weakly correlated
11 ZNF723 4 15.2 Weakly correlated
12 ZNF274 4 99.0 Weakly correlated
13 ZNF175 3 94.0 Weakly correlated
14 ZNF701 3 28.9 Weakly correlated
15 ZNF808 3 19.6 Weakly correlated
16 ZNF589 3 28.9 Weakly correlated
17 ZNF584 3 99.0 Weakly correlated
18 ZNF75D 2 94.0 Weakly correlated
19 ZFP37 2 99.0 Weakly correlated
20 ZNF92 2 28.9 Weakly correlated
21 ZKSCAN1 2 160.0 Weakly correlated
22 ZNF394 2 99.0 Weakly correlated
23 ZKSCAN8 2 160.0 Weakly correlated
24 ZNF101 2 43.0 Weakly correlated
25 ZNF140 2 99.0 Weakly correlated
26 ZNF197 2 99.0 Weakly correlated
27 ZNF317 2 99.0 Weakly correlated
28 ZNF675 1 8.6 Weakly correlated
29 ZNF136 1 74.0 Moderately correlated
30 ZNF251 1 94.0 Weakly correlated
31 ZNF429 1 28.9 Weakly correlated
32 ZNF320 1 28.9 Weakly correlated
33 ZNF587 1 28.9 Weakly correlated
34 ZNF585B 1 99.0 Weakly correlated
35 ZNF324 1 99.0 Weakly correlated
36 ZNF554 1 99.0 Weakly correlated
37 ZNF549 1 87.0 Highly correlated
38 ZNF479 1 6.4 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 19 87.0 Highly correlated
2 ZNF534 6 19.6 Weakly correlated
3 ZNF263 6 180.0 Weakly correlated
4 ZNF224 3 69.0 Weakly correlated
5 ZNF680 2 28.9 Weakly correlated
6 ZNF723 2 15.2 Weakly correlated
7 ZNF18 2 160.0 Weakly correlated
8 ZNF679 2 28.9 Weakly correlated
9 ZNF317 1 99.0 Weakly correlated
10 ZNF589 1 28.9 Weakly correlated
11 ZFP57 1 87.0 Highly correlated
12 ZNF701 1 28.9 Weakly correlated
13 ZNF175 1 94.0 Weakly correlated
14 ZNF429 1 28.9 Weakly correlated
15 ZNF197 1 99.0 Weakly correlated
16 ZNF675 1 8.6 Weakly correlated
17 ZNF75D 1 94.0 Weakly correlated
18 ZNF585B 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Highly correlated
2 ZNF263 180.0 Weakly correlated
3 ZNF534 19.6 Weakly correlated