ZRdb KZFP & Repeats
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LTR_MER70A

  • Name
    MER70A
  • Repbase
    MER70A
  • Type
    LTR
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000918
Description :

MER70A has been revised and its orientation reversed from its originalpresentation. It is associated with MER70-int, and has 5 bp TSDs. Notethat MER stands for MEdium Reiteration frequency interspersed repeat. Assuch, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgcaggacagttctccgggtggccttggaccgacccagttctcccccctttctcgcttgtagttctcaagaataactgtagaatgtgctgggaatgcaacatcctgagatagggaggaactggccggaacagcccgggctctgttccagtcccccctagaaacaggatgtccttcaacgctttagcccagcgngtcacgtngcccctggggtataaaacccagggcgggctgctttccggggtccctcagctgcggtgcaagtggggcacgcgcagncgagactccatccgccccgggcagctttcctgagccttgggggaccggctcgcaatgaatcctaggcttctgttgtcccttgctgcctatctgtaagtaataaacccgcttcatgtaacttgttgcgtgtgtgggtgttctgtctcaccggactcagacaagttggtaaccagtgcacagtgaacctgcttcaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF224 135 69.0 Weakly correlated
2 ZIM3 68 87.0 Highly correlated
3 ZNF382 13 99.0 Weakly correlated
4 ZNF263 9 180.0 Weakly correlated
5 ZNF766 5 43.0 Weakly correlated
6 ZNF680 4 28.9 Weakly correlated
7 ZNF324 4 99.0 Weakly correlated
8 ZNF558 4 99.0 Weakly correlated
9 ZNF554 4 99.0 Weakly correlated
10 ZFP37 3 99.0 Weakly correlated
11 ZNF425 3 94.0 Weakly correlated
12 ZNF394 3 99.0 Weakly correlated
13 ZNF317 3 99.0 Weakly correlated
14 ZNF534 3 19.6 Weakly correlated
15 ZNF549 3 87.0 Highly correlated
16 ZNF679 3 28.9 Weakly correlated
17 ZNF701 3 28.9 Weakly correlated
18 ZNF92 3 28.9 Weakly correlated
19 ZNF490 2 43.0 Weakly correlated
20 ZNF584 2 99.0 Weakly correlated
21 ZNF589 2 28.9 Weakly correlated
22 ZNF479 2 6.4 Weakly correlated
23 ZNF2 2 99.0 Weakly correlated
24 ZFP69B 1 99.0 Weakly correlated
25 ZNF486 1 8.6 Weakly correlated
26 ZNF8 1 99.0 Weakly correlated
27 ZNF808 1 19.6 Weakly correlated
28 ZNF792 1 94.0 Weakly correlated
29 ZNF789 1 99.0 Weakly correlated
30 ZNF780A 1 43.0 Weakly correlated
31 ZFP69 1 99.0 Weakly correlated
32 ZNF723 1 15.2 Weakly correlated
33 ZNF705B 1 28.9 Weakly correlated
34 ZKSCAN1 1 160.0 Weakly correlated
35 ZKSCAN8 1 160.0 Weakly correlated
36 ZNF101 1 43.0 Weakly correlated
37 ZNF175 1 94.0 Weakly correlated
38 ZNF18 1 160.0 Weakly correlated
39 ZNF197 1 99.0 Weakly correlated
40 ZNF274 1 99.0 Weakly correlated
41 ZNF283 1 99.0 Weakly correlated
42 ZNF28 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 44 87.0 Highly correlated
2 ZNF224 3 69.0 Weakly correlated
3 ZNF263 3 180.0 Weakly correlated
4 ZNF534 3 19.6 Weakly correlated
5 ZNF680 2 28.9 Weakly correlated
6 ZNF554 2 99.0 Weakly correlated
7 ZNF701 2 28.9 Weakly correlated
8 ZNF175 1 94.0 Weakly correlated
9 ZNF558 1 99.0 Weakly correlated
10 ZNF92 1 28.9 Weakly correlated
11 ZNF28 1 28.9 Weakly correlated
12 ZNF589 1 28.9 Weakly correlated
13 ZNF382 1 99.0 Weakly correlated
14 ZNF584 1 99.0 Weakly correlated
15 ZNF679 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Highly correlated