ZRdb KZFP & Repeats
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LTR_MER70-INT

  • Name
    MER70-INT
  • Repbase
    MER70_I
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000921
Description :

MER70-int is an internal portion of the HERVL70 endogenous retrovirusflanked by the long terminal repeats MER70A and MER70B. Note that MERstands for MEdium Reiteration frequency interspersed repeat. As such,MERs as a group are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
aaattggcgcagcgagcagggtccggtctgacggaaccatggcttattggcgaagcgggaggggcgataccccccagtacccggcccagggcggagacgtcagcctgggggcgcgggggctggacatgcagctggatgttttatggggaaggaggggtgataagtgggacatagtccccccacctcccccgcagatgtgagtgagctggctgcatggatcgaggcagagagaaaggaatgtggaaacaggggagngcggcgcacgatcccctggttgttgggcacttatgtgattgctcattcccggggccggagagctcgggaagtgggtactcagacggaccctgaggcacctgagagggaannagaaaggggtcctcagatggtccctgaggcatctgagagggaaccaacacgcgcgatgcgggccttcacagaaagggagactcactatctaaaggacagatatggagaaaggccagggaagtcttatgcagcctggttggtgtgtttgtttgataaagggacattgcagacccaaatgtctcgggctgaatggcgcagttaggaatggggccaaggtctccgggtccccaccggaggccaatggccctatactcctgtcaagataaaaggagaaaagaaaggaattcagacttttctggggttcttggatactggagcccacatgacaatatttccaggtccccttaggggaaaaattaaactgatgacatcgggaggtttngggacgaacgcggtgacccgtggtgcttatctgcttgtggtgcttatctgcttgtgggtggggccctttgggccatttcgggtgccggtgaccgtggttcccaccgctgagtgcattataggcattgacattttggctgcttgtggcacagaacatcaccgccgcctgagggggtatgccccctcacagctaagaattcgagccataacagtggggcatatccactcctgcctgccacctaagctacccaagccccagtgggttattcaacaaaagcagtactgcatactaagtggagaanaggacattactttgttaattcaggacttgctacagataaaaatgttacaaaccaccctgtcacaatgtaacagcccagtttggctggtcaaaaaggccttcggggcatggagactaacaatggactgtcgcaggctgaatgccggggtctacccnttggcccncgaggtccagatatcatcaccgtcactgagnacancgtgggggnnnncancgnatggtatggtncagttantgacttggctagtgcctttttctcaatcccnttgngggatgaggatcaagaccaatttgcgttcacatggaacggcctacagtatactttcactgtgcttcctcagggatacttcaattcccctgcaatatgccgccagtgggtaggantcganntcgncaaaatcctntcncnnagagtantcacgtncattcattacatcgatganatcctgatagtagcccctgnngannnnatnacgnangaggccgtgggcttgatnggcacantgacgtggctagctggttggantatcaatcctaatagnccagganccagcnnaacaagtgncaattcccaaggccacttgggcgggaagccaaagaagtatcccagatacagtcaagcaaaaattgttggccctggcggcacccactaataaaaaggaggcccaacagccggtaggcctctttgggtactggagacagcatataccccacctgggtgttcttttggtccccttagtcaaagtgaccaacaaagccgccaactttgaacggggccctttgcagcagcaggccttggaagccgttcaacaagncgtggcccaggcactgcctttaaaacctttagagcctgctagcccgatggaantncaggtgtccgcaacctccatgcatgctgactggagtctgtggcaacagaaaactgccactggggtgcaccagcctctcagattttggacacataagttgcctgaggcagccaccagatgtacctcttttgaatggcaactccttgcttgctattgggcactggtggggactgagcatcttanggccggagcgccacgtgtgacgctgcnacctgaactgcccattctcacttgggtgcctacaaaccccaccaataaaactggacaggctcaacagagctcaattatcaaatggaaatggtacattcaggatcgggcccagccaggaccccangggaccngtgggctccatgaacaaatggcnagcttgccagaagggaccaagcgacccgtaggggatnntttggctcctcctntggccacctggggcccaagattcagagacatgcctaccgacggtatggcatggngtttactgatggctctgcgaaacgacaagccggtgggtccactgggctgcggccaccatccagccagtggatggccatcttttgactgagactggacatgggcgttccgcccaatgggccaaactacatgcagtggtgatggccatgcaggccgcccctaccaccatatcttgctacattttcactgactcatgggccattgccaacagcctagccatctggtcaggagaatggcaactgagtgactggactattaaaggatcccctgtgtggggacaaggactatggcaacagcttgctgcctggaagggacaaatatatgtcactcatgtggatgctggggctaccatggccacccttgagaggaacttatgtcatgtttttggataccccatgggacttcactctgaccaaggaacatccttcactgcccaagcaacatgacaatgggcacactctcgtggaacacgatgggctttccatgcaccctgtcatccncaggccaatggagctattgaatgatggaacagccgactcacanagcaactgaagaaaggacatcaagacggcctgctagtggggtggtaccccnatctgactagggcaatatggacactaaacactgcgctccaatgcaagggaaacacggcactgcagcgcatgttgagaaacactgagcttggtgggggtggaggtggaccaggcagccgcctgattaggctgcgcctgcgaaatcccaatctcagtgttcccaaccattctttttcctttttccctttagagtgcacgtcctgggggtggtttgcggttcaggccgccatagtaccccagacagggccccctgactctaatctggaggcgatgcttcccctgggtgcctcccttctatgggatcccacaggggtgggggacgggaccaaggaataccagggtgctagggtccctctagtggcgccggggacatctgatccttccattcgggtgggcgacgttatcagacatgtcaagtttgtacaggacgtgacctcccttcctggactggacgaccgaggccgaaaggtctgggtcaagcaacaagggcaatggtgcccgcagaggtagtagcctcgggacngggacagacagaccgggtcgctacaccaactcagcccaacccctatccgataggtagggaacacctgagaccccgggaggggtgggggtggggcactaacctgtcagtctgctttttccacaaggacgnggcagcagaggcctggaagcataacgcctttgttaggctcttccaagccgtggccaccgcgggtaacctgacaaagtgctggatctgccatcccggacctcgttctgtcacngaccagagcgaccctctcatcctgccagtggtaaactacaccagcattcctaatgccacggtgtacancaacggaacccgagccctggcttaccgagtgaggacctggcacctgccacatgggagggagccggaggtgccctgttttaacttaantgactcnntgtggcaaaatgtcacgaccacaactaacaaaaccttggtgggctggtactttgacgcaccangctcctttgattacatggataagaagtgtcccaatggcgatgangaaaacaaggaccggactagtgctagccctctgcgtaggggcttcatgaacaatattgtatggggaaaactgagctcatgcaactatgccatcaatgagacttggctggcgaacgccaatgcctccatacccatgaatgggtcactgaacaataaaacgggagagggngtgctgtgtgcgcccgagggctacatctttctctgtgggcggtctgggagtgacccaaatgcggggtgggcaatgtcatgcctggaaagctggcggatggtgggatcctgcacgttgggcgtgctgggggtgcccctggatatcacccccgggaatgaggtgcaccattgggccagcagcctaaagctgtacaccaggcttactagggacctgccaggaggtgtaactgactctgggtttatgtcctttatgagatctttggtaccatacataggagtcagtgctcatgaaaaaatgataagaaacctgtccctgaccatggcagatattgcttcctccacngccactgccttggnagcccagcagacatccctcaactccntcgggaaggttgttttagacaacagaattgctctagactttcttttagcccaactgggaggagtgtatgcaattgccaacacctcctgctgtacctggataaacacctcaggtatcgtagaaacacaagtagaggagatccggaagcaggcccactggctgcagacagtggggccacctgaaggatccttctttgacctctttagcaacttcttacctggatcactgggatcctgggctaggtcactgcttcgggcgggcctgatcatcctgcctgtggtagtagtcctcctgggcccagtgaaatgtattctggctatggctcaatgatgttgcactgagattgtgtcagtcaaggtgctacatcgatctgacgagacaaacctctgcctccagatccggggaggtcggtgggcatatgaaatggactagctttgctaagggggatatctgggtcggggg
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 7 99.0 Highly correlated
2 ZNF528 5 43.0 Weakly correlated
3 ZNF317 4 99.0 Highly correlated
4 ZNF679 4 28.9 Weakly correlated
5 ZNF680 3 28.9 Weakly correlated
6 ZNF534 3 19.6 Weakly correlated
7 ZNF735 2 28.9 Weakly correlated
8 ZNF723 2 15.2 Weakly correlated
9 ZNF705D 2 28.9 Weakly correlated
10 ZFP57 2 87.0 Moderately correlated
11 ZNF479 1 6.4 Weakly correlated
12 ZNF793 1 99.0 Highly correlated
13 ZNF777 1 319.0 Weakly correlated
14 ZNF766 1 43.0 Weakly correlated
15 ZNF736 1 43.0 Weakly correlated
16 ZNF394 1 99.0 Highly correlated
17 ZNF2 1 99.0 Highly correlated
18 ZNF251 1 94.0 Moderately correlated
19 ZNF182 1 99.0 Highly correlated
20 ZNF175 1 94.0 Moderately correlated
21 ZNF101 1 43.0 Weakly correlated
22 ZKSCAN8 1 160.0 Weakly correlated
23 ZIM3 1 87.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 2 19.6 Weakly correlated
2 ZNF680 2 28.9 Weakly correlated
3 ZNF723 2 15.2 Weakly correlated
4 ZFP57 1 87.0 Moderately correlated
5 ZIM3 1 87.0 Moderately correlated
6 ZNF182 1 99.0 Highly correlated
7 ZNF528 1 43.0 Weakly correlated
8 ZNF793 1 99.0 Highly correlated
9 ZNF479 1 6.4 Weakly correlated
10 ZNF735 1 28.9 Weakly correlated
11 ZNF679 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats