ZRdb KZFP & Repeats
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LTR_MER68B

  • Name
    MER68B
  • Repbase
    MER68B
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000912
Description :

MER68B has 5 bp TSDs, and is similar to MER77. It was initiallypresented in the opposite orientation. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgcagaaaagagttaacatagcaggcctgagactgctatccttagaaaggcctgcttgcaaggttggcccttggctggcgtctgggaacttggctttcgggagggttcccaccgttccctaactgataagggtggctcactgtgcctagactgtttgtgcaaacaatgtggtttatgctgaacacctgctttccttctgggagtctggaattttggtacgtgctaggcagagggtgcctacgtgaccagcccccagtaaaaaccttgggcgctgagtctctaatgggcttccctgggcagaaacatcgcacacatgttgctgcattttcgttgctgggggaagagtgcgctctgtgtgacccctcgtgggagagagcataaggaagcctgcgcatggattcctccagactccgcctgtgtctttttcccttacgatccggctgtgtatccttactacgtcgctgtaataaatcttagccgtgagtacaactatatgctgagtcccgtgagtccttctagcgaatctccgaacgtgggggtggtcttggggacccccgacaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 18 99.0 Highly correlated
2 ZNF766 14 43.0 Weakly correlated
3 ZNF263 13 180.0 Weakly correlated
4 ZNF479 12 6.4 Weakly correlated
5 ZNF534 10 19.6 Weakly correlated
6 ZNF793 8 99.0 Highly correlated
7 ZNF394 8 99.0 Highly correlated
8 ZFP37 7 99.0 Highly correlated
9 ZNF175 7 94.0 Moderately correlated
10 ZFP69B 7 99.0 Highly correlated
11 ZNF197 6 99.0 Highly correlated
12 ZNF317 6 99.0 Highly correlated
13 ZNF589 5 28.9 Weakly correlated
14 ZNF584 5 99.0 Highly correlated
15 ZNF679 5 28.9 Weakly correlated
16 ZNF701 4 28.9 Weakly correlated
17 ZNF251 4 94.0 Moderately correlated
18 ZNF324 4 99.0 Highly correlated
19 ZNF723 3 15.2 Weakly correlated
20 ZNF705B 3 28.9 Weakly correlated
21 ZNF705D 3 28.9 Weakly correlated
22 ZNF2 3 99.0 Highly correlated
23 ZNF264 3 99.0 Highly correlated
24 ZNF615 3 99.0 Highly correlated
25 ZNF610 3 28.9 Weakly correlated
26 ZKSCAN8 2 160.0 Weakly correlated
27 ZNF680 2 28.9 Weakly correlated
28 ZNF558 2 99.0 Highly correlated
29 ZKSCAN1 2 160.0 Weakly correlated
30 ZNF101 2 43.0 Weakly correlated
31 ZNF133 2 99.0 Highly correlated
32 ZNF778 2 74.0 Weakly correlated
33 ZNF18 2 160.0 Weakly correlated
34 ZFP28 2 99.0 Highly correlated
35 ZNF695 1 28.9 Weakly correlated
36 ZIM3 1 87.0 Moderately correlated
37 ZNF716 1 19.6 Weakly correlated
38 ZNF674 1 99.0 Highly correlated
39 ZNF641 1 99.0 Highly correlated
40 ZNF786 1 99.0 Highly correlated
41 ZNF597 1 94.0 Moderately correlated
42 ZNF554 1 99.0 Highly correlated
43 ZNF549 1 87.0 Moderately correlated
44 ZNF547 1 74.0 Weakly correlated
45 ZNF528 1 43.0 Weakly correlated
46 ZNF506 1 28.9 Weakly correlated
47 ZNF485 1 94.0 Moderately correlated
48 ZNF483 1 99.0 Highly correlated
49 ZNF425 1 94.0 Moderately correlated
50 ZNF33A 1 99.0 Highly correlated
51 ZNF283 1 99.0 Highly correlated
52 ZNF273 1 28.9 Weakly correlated
53 ZNF248 1 99.0 Highly correlated
54 ZNF222 1 43.0 Weakly correlated
55 ZNF182 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 9 19.6 Weakly correlated
2 ZNF479 7 6.4 Weakly correlated
3 ZNF263 4 180.0 Weakly correlated
4 ZNF793 3 99.0 Highly correlated
5 ZNF723 2 15.2 Weakly correlated
6 ZNF766 2 43.0 Weakly correlated
7 ZNF701 2 28.9 Weakly correlated
8 ZNF382 1 99.0 Highly correlated
9 ZNF641 1 99.0 Highly correlated
10 ZNF716 1 19.6 Weakly correlated
11 ZNF317 1 99.0 Highly correlated
12 ZNF506 1 28.9 Weakly correlated
13 ZFP28 1 99.0 Highly correlated
14 ZNF778 1 74.0 Weakly correlated
15 ZNF485 1 94.0 Moderately correlated
16 ZNF615 1 99.0 Highly correlated
17 ZNF264 1 99.0 Highly correlated
18 ZNF251 1 94.0 Moderately correlated
19 ZNF680 1 28.9 Weakly correlated
20 ZNF324 1 99.0 Highly correlated
21 ZIM3 1 87.0 Moderately correlated
22 ZFP37 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats