ZRdb KZFP & Repeats
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LTR_MER68

  • Name
    MER68
  • Repbase
    MER68A
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000911
Description :

MER68 has 5 bp TSDs, and is similar to MER77. Previously known asMER68A, it was initially presented in the opposite orientation. This LTRand MER68-int form a complete MER68 retroelement. Note that MER standsfor MEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgcagaaaagagttaacatagcaggcctgagactgctatccttagaaaggcctgcttgcaaggttggcccttggctggcgtctgggaacttggatttcgggagggttcccaccattcccgnaactgataagagtggctcactgtgcctaaactgtttgtacaaacaatgtggtttatgctgaacacctgctttccttctgggagtctggaattttggtacgtgctaggcagagggtgcctacgtgaccagcccccaataaaaaccctgggcactgagtctctaatgagcttccctggtagacaacatttcacacgtgttgtcacaactcgttgctggaggaattaagcgcgtcctgtgtgactccactgggagaggactcttggaagcttgcgcctggtttcctccggacttcgccccatgcgccttttccctttgctgattttgctttgtatcctttcgctgtaataaatcatagccgtgagtacgactatatgctgagtcctgtgagtcctcctagcgaatcaccgaacctgggggtggtcttggggacccccgacaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 114 6.4 Weakly correlated
2 ZNF382 105 99.0 Highly correlated
3 ZNF263 53 180.0 Weakly correlated
4 ZNF394 25 99.0 Highly correlated
5 ZNF766 25 43.0 Weakly correlated
6 ZNF18 21 160.0 Weakly correlated
7 ZFP37 19 99.0 Highly correlated
8 ZKSCAN1 18 160.0 Weakly correlated
9 ZNF317 16 99.0 Highly correlated
10 ZNF589 15 28.9 Weakly correlated
11 ZNF554 14 99.0 Highly correlated
12 ZFP69B 12 99.0 Highly correlated
13 ZNF2 12 99.0 Highly correlated
14 ZIM3 11 87.0 Moderately correlated
15 ZNF558 11 99.0 Highly correlated
16 ZNF679 10 28.9 Weakly correlated
17 ZNF101 10 43.0 Weakly correlated
18 ZNF175 9 94.0 Moderately correlated
19 ZNF680 9 28.9 Weakly correlated
20 ZNF251 9 94.0 Moderately correlated
21 ZNF584 9 99.0 Highly correlated
22 ZKSCAN8 8 160.0 Weakly correlated
23 ZNF324 8 99.0 Highly correlated
24 ZNF140 8 99.0 Highly correlated
25 ZNF793 7 99.0 Highly correlated
26 ZNF75D 7 94.0 Moderately correlated
27 ZNF197 7 99.0 Highly correlated
28 ZNF547 6 74.0 Weakly correlated
29 ZNF701 6 28.9 Weakly correlated
30 ZNF534 6 19.6 Weakly correlated
31 ZNF610 5 28.9 Weakly correlated
32 ZNF506 5 28.9 Weakly correlated
33 ZNF528 5 43.0 Weakly correlated
34 ZNF320 5 28.9 Weakly correlated
35 ZNF92 4 28.9 Weakly correlated
36 ZNF549 4 87.0 Moderately correlated
37 ZNF707 4 74.0 Weakly correlated
38 ZNF723 4 15.2 Weakly correlated
39 ZNF257 4 0.0 Weakly correlated
40 ZNF264 4 99.0 Highly correlated
41 ZNF573 3 94.0 Moderately correlated
42 ZNF705B 3 28.9 Weakly correlated
43 ZNF133 3 99.0 Highly correlated
44 ZNF485 3 94.0 Moderately correlated
45 ZNF28 3 28.9 Weakly correlated
46 ZNF425 3 94.0 Moderately correlated
47 ZNF705D 3 28.9 Weakly correlated
48 ZFP57 2 87.0 Moderately correlated
49 ZNF778 2 74.0 Weakly correlated
50 ZNF780A 2 43.0 Weakly correlated
51 ZNF799 2 43.0 Weakly correlated
52 ZNF808 2 19.6 Weakly correlated
53 ZNF682 2 28.9 Weakly correlated
54 ZNF695 2 28.9 Weakly correlated
55 ZNF490 2 43.0 Weakly correlated
56 ZNF486 2 8.6 Weakly correlated
57 ZNF274 2 99.0 Highly correlated
58 ZNF468 2 28.9 Weakly correlated
59 ZNF182 2 99.0 Highly correlated
60 ZNF141 2 43.0 Weakly correlated
61 ZNF429 2 28.9 Weakly correlated
62 ZNF283 1 99.0 Highly correlated
63 ZNF93 1 8.6 Weakly correlated
64 ZNF248 1 99.0 Highly correlated
65 ZNF786 1 99.0 Highly correlated
66 ZNF789 1 99.0 Highly correlated
67 ZNF792 1 94.0 Moderately correlated
68 ZNF169 1 94.0 Moderately correlated
69 ZNF154 1 94.0 Moderately correlated
70 ZNF816 1 28.9 Weakly correlated
71 ZNF85 1 28.9 Weakly correlated
72 ZNF879 1 99.0 Highly correlated
73 ZIK1 1 87.0 Moderately correlated
74 ZNF565 1 99.0 Highly correlated
75 ZNF735 1 28.9 Weakly correlated
76 ZNF730 1 19.6 Weakly correlated
77 ZNF331 1 94.0 Moderately correlated
78 ZNF718 1 19.6 Weakly correlated
79 ZNF337 1 43.0 Weakly correlated
80 ZNF33A 1 99.0 Highly correlated
81 ZNF343 1 74.0 Weakly correlated
82 ZNF41 1 99.0 Highly correlated
83 ZNF432 1 99.0 Highly correlated
84 ZNF440 1 28.9 Weakly correlated
85 ZNF441 1 43.0 Weakly correlated
86 ZNF671 1 94.0 Moderately correlated
87 ZNF615 1 99.0 Highly correlated
88 ZNF597 1 94.0 Moderately correlated
89 ZNF595 1 43.0 Weakly correlated
90 ZNF585A 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 93 6.4 Weakly correlated
2 ZNF263 22 180.0 Weakly correlated
3 ZNF554 9 99.0 Highly correlated
4 ZFP37 7 99.0 Highly correlated
5 ZIM3 5 87.0 Moderately correlated
6 ZNF506 5 28.9 Weakly correlated
7 ZNF679 4 28.9 Weakly correlated
8 ZNF75D 4 94.0 Moderately correlated
9 ZNF382 4 99.0 Highly correlated
10 ZNF534 3 19.6 Weakly correlated
11 ZNF766 3 43.0 Weakly correlated
12 ZNF485 3 94.0 Moderately correlated
13 ZNF197 3 99.0 Highly correlated
14 ZNF18 3 160.0 Weakly correlated
15 ZNF175 2 94.0 Moderately correlated
16 ZNF723 2 15.2 Weakly correlated
17 ZFP69B 2 99.0 Highly correlated
18 ZNF584 2 99.0 Highly correlated
19 ZNF257 2 0.0 Weakly correlated
20 ZNF317 2 99.0 Highly correlated
21 ZNF251 2 94.0 Moderately correlated
22 ZNF320 2 28.9 Weakly correlated
23 ZNF589 2 28.9 Weakly correlated
24 ZNF680 2 28.9 Weakly correlated
25 ZNF793 2 99.0 Highly correlated
26 ZNF28 1 28.9 Weakly correlated
27 ZNF248 1 99.0 Highly correlated
28 ZNF490 1 43.0 Weakly correlated
29 ZNF133 1 99.0 Highly correlated
30 ZNF92 1 28.9 Weakly correlated
31 ZNF701 1 28.9 Weakly correlated
32 ZNF93 1 8.6 Weakly correlated
33 ZNF799 1 43.0 Weakly correlated
34 ZFP57 1 87.0 Moderately correlated
35 ZKSCAN1 1 160.0 Weakly correlated
36 ZNF141 1 43.0 Weakly correlated
37 ZNF585A 1 99.0 Highly correlated
38 ZNF440 1 28.9 Weakly correlated
39 ZNF41 1 99.0 Highly correlated
40 ZNF429 1 28.9 Weakly correlated
41 ZNF792 1 94.0 Moderately correlated
42 ZNF468 1 28.9 Weakly correlated
43 ZNF816 1 28.9 Weakly correlated
44 ZNF2 1 99.0 Highly correlated
45 ZNF33A 1 99.0 Highly correlated
46 ZNF573 1 94.0 Moderately correlated
47 ZNF597 1 94.0 Moderately correlated
48 ZNF264 1 99.0 Highly correlated
49 ZNF331 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Highly correlated
2 ZNF263 180.0 Weakly correlated
3 ZNF479 6.4 Weakly correlated
4 ZNF554 99.0 Highly correlated